myRT

myRT report for GCA_013215055.1_ASM1321505v1

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Seq: JABSRQ010000265.1 Pseudomonadales bacterium isolate DT_90 DT-Pseudomonadales-1_scaffold_266, whole genome shotgun sequence (5636 bp)
Overview 1 RT 1: 698-4252 bp Neighborhood of RT #1 [698, 4392] RVT-GII ECF_S_folT_fam COG3547 Feature: gene Location: 698-2023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1 676 bp Feature: gene Location: 2253-2825 bp Feature: domain Description: ECF_S_folT_fam Location: 2280-2469 bp Feature: domain Description: ECF_S_folT_fam Location: 2280-2469 bp Feature: gene Location: 3244-4392 bp Feature: domain Description: COG3547 Location: 3280-4252 bp Feature: domain Description: COG3547 Location: 3280-4252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ECF_S_folT_fam (TIGR04518), COG3547 (Transposase )

Seq: JABSRQ010000288.1 Pseudomonadales bacterium isolate DT_90 DT-Pseudomonadales-1_scaffold_289, whole genome shotgun sequence (4826 bp)
Overview 1 RT 1: 2-4801 bp Neighborhood of RT #1 [2, 4824] RVT-GII RVT-GII GIIM RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 2-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 15-581 bp Feature: gene Location: 855-1019 bp Feature: gene Location: 1207-1341 bp Feature: gene Location: 1526-2332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1547-1886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1547-1886 bp Feature: domain Description: GIIM Note: maturase Location: 1931-2153 bp Feature: domain Description: GIIM Note: maturase Location: 1931-2 153 bp Feature: gene Location: 2490-3920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2850-3543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 850-3543 bp Feature: gene Location: 4099-4332 bp Feature: gene Location: 4363-4824 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4366-4669 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4366-4669 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4687-4801 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4687-4801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: JABSRQ010000408.1 Pseudomonadales bacterium isolate DT_90 DT-Pseudomonadales-1_scaffold_409, whole genome shotgun sequence (2708 bp)
Overview 1 RT 1: 2-2706 bp Neighborhood of RT #1 [2, 2706] PHA02517 RVT-GII group_II_RT_mat Feature: gene Location: 2-295 bp Feature: domain Description: PHA02517 Location: 5-224 bp Feature: domain Description: PHA02517 Location: 5-224 bp Feature: gene Location: 884-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1157-1595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1157-1595 bp Feature: gene Location: 1835-2407 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1841-2153 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1841-2153 bp Feature: gene Location: 2572-2706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JABSRQ010000068.1 Pseudomonadales bacterium isolate DT_90 DT-Pseudomonadales-1_scaffold_69, whole genome shotgun sequence (27136 bp)
Overview 1 RT 1: 17312-19940 bp Neighborhood of RT #1 [17312, 19940] EF-hand_6 EF-hand_6 RVT-GII GIIM Feature: gene Location: 17312-17599 bp Feature: domain Description: EF-hand_6 Location: 17414-17462 bp Feature: domain Description: EF-hand_6 Location: 174 14 -174 62 bp Feature: domain Description: EF-hand_6 Location: 17471-17504 bp Feature: domain Description: EF-hand_6 Location: 174 71-17504 bp Feature: gene Location: 17725-18105 bp Feature: gene Location: 18384-18884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18393-18516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18393-18516 bp Feature: domain Description: GIIM Note: maturase Location: 18609-18801 bp Feature: domain Description: GIIM Note: maturase Location: 18609-18801 bp Feature: gene Location: 19020-19349 bp Feature: gene Location: 19482-19940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EF-hand_6 (pfam13405), RVT-GII, GIIM (pfam08388)