myRT

myRT report for GCA_013215085.1_ASM1321508v1

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Seq: JABSQG010000001.1 Idiomarina sp. isolate DT_54 DT-Idiomarina-2_scaffold_1, whole genome shotgun sequence (250109 bp)
Overview 1 RT 1: 215731-224191 bp Neighborhood of RT #1 [215731, 224577] PRK09692 RVT-UG8 RVT-UG3 DUF45 COG0610 Feature: gene Location: 215731-216990 bp Feature: domain Description: PRK09692 Location: 215776-216976 bp Feature: domain Description: PRK09692 Location: 21 5776-21 6976 bp Feature: gene Location: 217039-217254 bp Feature: gene Location: 217413-219308 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 217911-218349 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 21 791 1 -21 8349 bp Feature: gene Location: 219301-220479 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 219586-220048 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 21 9586-220048 bp Feature: gene Location: 220507-221292 bp Feature: domain Description: DUF45 Location: 220636-221263 bp Feature: domain Description: DUF45 Location: 220636-221 263 bp Feature: gene Location: 221296-224577 bp Feature: domain Description: COG0610 Location: 221326-224191 bp Feature: domain Description: COG061 0 Location: 221 326-2241 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG8, RVT-UG3, DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: JABSQG010000017.1 Idiomarina sp. isolate DT_54 DT-Idiomarina-2_scaffold_18, whole genome shotgun sequence (48678 bp)
Overview 1 RT 1: 44235-46734 bp Neighborhood of RT #1 [44235, 46808] Avd_like RVT-DGRs Peptidase_C92 Feature: gene Location: 44235-44594 bp Feature: domain Description: Avd_like Location: 44262-44562 bp Feature: domain Description: Avd_like Location: 442 62 -44562 bp Feature: gene Location: 44606-44764 bp Feature: gene Location: 44591-45853 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45023-45647 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4502 3-45647 bp Feature: gene Location: 45850-46392 bp Feature: gene Location: 46392-46808 bp Feature: domain Description: Peptidase_C92 Location: 46407-46734 bp Feature: domain Description: Peptidase_C92 Location: 46407-46734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Peptidase_C92 (pfam05708)

Seq: JABSQG010000026.1 Idiomarina sp. isolate DT_54 DT-Idiomarina-2_scaffold_27, whole genome shotgun sequence (10961 bp)
Overview 1 RT 1: 3793-10960 bp Neighborhood of RT #1 [3793, 10960] TamA TamB TamB RVT-GII GIIM Feature: gene Location: 3793-5520 bp Feature: domain Description: TamA Location: 3850-5518 bp Feature: domain Description: TamA Location: 3 850-5518 bp Feature: gene Location: 5517-8891 bp Feature: domain Description: TamB Location: 5520-6858 bp Feature: domain Description: TamB Location: 5520-6858 bp Feature: domain Description: TamB Location: 7368-8877 bp Feature: domain Description: TamB Location: 73 68-8877 bp Feature: gene Location: 9029-10297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9230-9848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923 0-9848 bp Feature: domain Description: GIIM Note: maturase Location: 9899-10118 bp Feature: domain Description: GIIM Note: maturase Location: 9899-10118 bp Feature: gene Location: 10299-10520 bp Feature: gene Location: 10670-10960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TamA (COG0729), TamB (pfam04357), RVT-GII, GIIM (pfam08388)

Seq: JABSQG010000030.1 Idiomarina sp. isolate DT_54 DT-Idiomarina-2_scaffold_31, whole genome shotgun sequence (4146 bp)
Overview 1 RT 1: 2-4128 bp Neighborhood of RT #1 [2, 4128] DDE_Tnp_1_6 IS285 RVT_N RVT-GII GIIM Feature: gene Location: 2-448 bp Feature: domain Description: DDE_Tnp_1_6 Location: 38-329 bp Feature: domain Description: DDE_Tnp_1_6 Location: 38-329 bp Feature: gene Location: 571-1779 bp Feature: domain Description: IS285 Location: 610-1768 bp Feature: domain Description: IS285 Location: 610-1768 bp Feature: gene Location: 1897-3384 bp Feature: domain Description: RVT_N Location: 1948-2182 bp Feature: domain Description: RVT_N Location: 194 8-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2236-2860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2236-2860 bp Feature: domain Description: GIIM Note: maturase Location: 2911-3145 bp Feature: domain Description: GIIM Note: maturase Location: 2911-314 5 bp Feature: gene Location: 3395-3568 bp Feature: gene Location: 3988-4128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABSQG010000004.1 Idiomarina sp. isolate DT_54 DT-Idiomarina-2_scaffold_4, whole genome shotgun sequence (233737 bp)
Overview 1 RT 1: 1462-6331 bp Neighborhood of RT #1 [1462, 6331] InsQ RVT-GII Intron_maturas2 HNHc InsQ Feature: gene Location: 1462-1986 bp Feature: gene Location: 2066-2338 bp Feature: domain Description: InsQ Location: 2072-2273 bp Feature: domain Description: InsQ Location: 2072-2273 bp Feature: gene Location: 2443-4347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2719-3595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2719-35 95 bp Feature: domain Description: Intron_maturas2 Location: 3679-4027 bp Feature: domain Description: Intron_maturas2 Location: 3679-4027 bp Feature: domain Description: HNHc Note: nucleases Location: 4126-4285 bp Feature: domain Description: HNHc Note: nucleases Location: 4126-4285 bp Feature: gene Location: 4341-5657 bp Feature: domain Description: InsQ Location: 4353-5142 bp Feature: domain Description: InsQ Location: 435 3-5 142 bp Feature: gene Location: 6023-6331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)