myRT

myRT report for GCA_013215145.1_ASM1321514v1

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Seq: JABSRP010000107.1 Pseudobacteriovorax sp. isolate DT_89 DT-Pseudobacteriovorax-1_scaffold_108, whole genome shotgun sequence (7383 bp)
Overview 1 RT 1: 336-3927 bp Neighborhood of RT #1 [336, 3980] RVT-GII GIIM GatA OmpR Feature: gene Location: 336-506 bp Feature: gene Location: 538-957 bp Feature: gene Location: 996-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1005-1218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 005-1 21 8 bp Feature: domain Description: GIIM Note: maturase Location: 1308-1515 bp Feature: domain Description: GIIM Note: maturase Location: 1 308-1 51 5 bp Feature: gene Location: 1744-3267 bp Feature: domain Description: GatA Location: 1813-3238 bp Feature: domain Description: GatA Location: 1 81 3-3238 bp Feature: gene Location: 3597-3980 bp Feature: domain Description: OmpR Location: 3615-3927 bp Feature: domain Description: OmpR Location: 361 5-3927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GatA (COG0154), OmpR (COG0745)

Seq: JABSRP010000120.1 Pseudobacteriovorax sp. isolate DT_89 DT-Pseudobacteriovorax-1_scaffold_121, whole genome shotgun sequence (4241 bp)
Overview 1 RT 1: 66-4079 bp Neighborhood of RT #1 [66, 4079] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 66-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360-978 bp Feature: domain Description: GIIM Note: maturase Location: 1056-1257 bp Feature: domain Description: GIIM Note: maturase Location: 1056-12 57 bp Feature: gene Location: 1341-1997 bp Feature: gene Location: 2148-3416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442-3060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 442 -3060 bp Feature: domain Description: GIIM Note: maturase Location: 3138-3357 bp Feature: domain Description: GIIM Note: maturase Location: 3138-3357 bp Feature: gene Location: 3423-4079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABSRP010000121.1 Pseudobacteriovorax sp. isolate DT_89 DT-Pseudobacteriovorax-1_scaffold_122, whole genome shotgun sequence (4092 bp)
Overview 1 RT 1: 1767-4089 bp Neighborhood of RT #1 [1767, 4089] TnpB_IS66 HTH_Tnp_1 RVT-GII Feature: gene Location: 1767-2102 bp Feature: domain Description: TnpB_IS66 Location: 1794-2070 bp Feature: domain Description: TnpB_IS66 Location: 1794-2070 bp Feature: gene Location: 2099-2425 bp Feature: domain Description: HTH_Tnp_1 Location: 2147-2252 bp Feature: domain Description: HTH_Tnp_1 Location: 2147-2252 bp Feature: gene Location: 2609-3901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2864-3533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2864-3 53 3 bp Feature: gene Location: 3946-4089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), RVT-GII

Seq: JABSRP010000013.1 Pseudobacteriovorax sp. isolate DT_89 DT-Pseudobacteriovorax-1_scaffold_14, whole genome shotgun sequence (237067 bp)
Overview 1 RT 1: 228970-231700 bp Neighborhood of RT #1 [228970, 231700] Metal_hydrol DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 228970-229782 bp Feature: domain Description: Metal_hydrol Location: 229006-229735 bp Feature: domain Description: Metal_hydrol Location: 229006-229735 bp Feature: gene Location: 229891-230208 bp Feature: domain Description: DDE_Tnp_IS66 Location: 229912-229996 bp Feature: domain Description: DDE_Tnp_IS66 Location: 229912-229996 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 230017-230131 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 230017-230131 bp Feature: gene Location: 230689-231123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230977-231115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230977-231115 bp Feature: gene Location: 231320-231508 bp Feature: gene Location: 231509-231700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Metal_hydrol (pfam10118), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: JABSRP010000002.1 Pseudobacteriovorax sp. isolate DT_89 DT-Pseudobacteriovorax-1_scaffold_2, whole genome shotgun sequence (159647 bp)
Overview 1 RT 1: 53008-59666 bp Neighborhood of RT #1 [53008, 59974] CheA CheA RVT-GII Recep_L_domain Recep_L_domain Feature: gene Location: 53008-55893 bp Feature: domain Description: CheA Location: 54922-55066 bp Feature: domain Description: CheA Location: 5 4922-5 5 066 bp Feature: domain Description: CheA Location: 55396-55789 bp Feature: domain Description: CheA Location: 5 5 396-5 5 789 bp Feature: gene Location: 55913-56302 bp Feature: gene Location: 57024-58346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57279-57972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7279-5 7972 bp Feature: gene Location: 58343-58504 bp Feature: gene Location: 59075-59974 bp Feature: domain Description: Recep_L_domain Location: 59327-59474 bp Feature: domain Description: Recep_L_domain Location: 5 9327-5 9474 bp Feature: domain Description: Recep_L_domain Location: 59540-59666 bp Feature: domain Description: Recep_L_domain Location: 5 95 40-5 9666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheA (COG0643), RVT-GII, Recep_L_domain (pfam01030)

Seq: JABSRP010000082.1 Pseudobacteriovorax sp. isolate DT_89 DT-Pseudobacteriovorax-1_scaffold_83, whole genome shotgun sequence (16569 bp)
Overview 1 RT 1: 14556-16159 bp Neighborhood of RT #1 [14556, 16518] RVT-GII Feature: gene Location: 14556-14855 bp Feature: gene Location: 14849-15079 bp Feature: gene Location: 15280-16518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15481-16159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15481-16 159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII