myRT

myRT report for GCA_013216005.1_ASM1321600v1

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Seq: JABSOJ010000151.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_153, whole genome shotgun sequence (9579 bp)
Overview 1 RT 1: 2351-5940 bp Neighborhood of RT #1 [2351, 6128] YncA RVT_N RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 2351-2890 bp Feature: domain Description: YncA Location: 2369-2879 bp Feature: domain Description: YncA Location: 2369-2879 bp Feature: gene Location: 2962-3129 bp Feature: gene Location: 3151-4635 bp Feature: domain Description: RVT_N Location: 3196-3439 bp Feature: domain Description: RVT_N Location: 31 96-3439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3484-4108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3484-41 08 bp Feature: domain Description: GIIM Note: maturase Location: 4159-4393 bp Feature: domain Description: GIIM Note: maturase Location: 41 59-4393 bp Feature: gene Location: 4873-5112 bp Feature: gene Location: 5151-6128 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5700-5940 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5700-5940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YncA (COG1247), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: JABSOJ010000195.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_197, whole genome shotgun sequence (7979 bp)
Overview 1 RT 1: 2661-7960 bp Neighborhood of RT #1 [2661, 7977] DUF350 HsdM AlbA_2 RVT-GII Feature: gene Location: 2661-2885 bp Feature: domain Description: DUF350 Location: 2715-2856 bp Feature: domain Description: DUF350 Location: 2 715-2 856 bp Feature: gene Location: 4222-6645 bp Feature: domain Description: HsdM Location: 4243-6124 bp Feature: domain Description: HsdM Location: 42 43-612 4 bp Feature: domain Description: AlbA_2 Location: 6178-6580 bp Feature: domain Description: AlbA_2 Location: 6178-6580 bp Feature: gene Location: 7210-7977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7486-7960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7486-7960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF350 (pfam03994), HsdM (COG0286), AlbA_2 (pfam04326), RVT-GII

Seq: JABSOJ010000027.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_29, whole genome shotgun sequence (27104 bp)
Overview 1 RT 1: 16176-20651 bp Neighborhood of RT #1 [16176, 20651] DUF4280 RimL RVT-UG4 Feature: gene Location: 16176-16565 bp Feature: domain Description: DUF4280 Location: 16191-16542 bp Feature: domain Description: DUF4280 Location: 16191-16542 bp Feature: gene Location: 16660-17724 bp Feature: domain Description: RimL Location: 17248-17587 bp Feature: domain Description: RimL Location: 17248-17587 bp Feature: gene Location: 17766-18812 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 18117-18582 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 18117-18582 bp Feature: gene Location: 19435-19566 bp Feature: gene Location: 20397-20651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4280 (pfam14107), RimL (COG1670), RVT-UG4

Seq: JABSOJ010000309.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_311, whole genome shotgun sequence (5273 bp)
Overview 1 RT 1: 2435-5059 bp Neighborhood of RT #1 [2435, 5154] PQQ_ABC_repeats PQQ_ABC_repeats GIIM RVT-GII Feature: gene Location: 2435-3679 bp Feature: domain Description: PQQ_ABC_repeats Location: 2762-3044 bp Feature: domain Description: PQQ_ABC_repeats Location: 2762-304 4 bp Feature: domain Description: PQQ_ABC_repeats Location: 3371-3644 bp Feature: domain Description: PQQ_ABC_repeats Location: 3371-364 4 bp Feature: gene Location: 3905-4174 bp Feature: domain Description: GIIM Note: maturase Location: 3917-4088 bp Feature: domain Description: GIIM Note: maturase Location: 3917-4 088 bp Feature: gene Location: 4198-5154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4402-5059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 02-5059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PQQ_ABC_repeats (TIGR03866), GIIM (pfam08388), RVT-GII

Seq: JABSOJ010000321.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_323, whole genome shotgun sequence (4999 bp)
Overview 1 RT 1: 2-2900 bp Neighborhood of RT #1 [2, 3205] RVT-GII Phage-tail_3 DUF2163 Feature: gene Location: 2-790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-791 bp Feature: gene Location: 1121-2584 bp Feature: domain Description: Phage-tail_3 Location: 1889-2363 bp Feature: domain Description: Phage-tail_3 Location: 1889-2363 bp Feature: gene Location: 2585-3205 bp Feature: domain Description: DUF2163 Location: 2588-2900 bp Feature: domain Description: DUF2163 Location: 25 88-2900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage-tail_3 (pfam13550), DUF2163 (pfam09931)

Seq: JABSOJ010000422.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_424, whole genome shotgun sequence (3723 bp)
Overview 1 RT 1: 3-3201 bp Neighborhood of RT #1 [3, 3269] RVT_N RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 3-227 bp Feature: gene Location: 240-1889 bp Feature: domain Description: RVT_N Location: 453-693 bp Feature: domain Description: RVT_N Location: 453-6 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-1365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-136 5 bp Feature: domain Description: GIIM Note: maturase Location: 1416-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1416 -16 50 bp Feature: gene Location: 2253-3269 bp Feature: domain Description: RVT_N Location: 2298-2535 bp Feature: domain Description: RVT_N Location: 2298-2535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2586-3201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2586 -3201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABSOJ010000486.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_488, whole genome shotgun sequence (3241 bp)
Overview 1 RT 1: 165-3174 bp Neighborhood of RT #1 [165, 3174] Doc RVT-UG4 Feature: gene Location: 165-563 bp Feature: domain Description: Doc Location: 174-531 bp Feature: domain Description: Doc Location: 17 4-531 bp Feature: gene Location: 563-733 bp Feature: gene Location: 1276-2310 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1651-2089 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1651-2089 bp Feature: gene Location: 3034-3174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Doc (COG3654), RVT-UG4

Seq: JABSOJ010000508.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_510, whole genome shotgun sequence (3031 bp)
Overview 1 RT 1: 1787-2938 bp Neighborhood of RT #1 [1787, 3030] RVT-GII GIIM Feature: gene Location: 1787-1957 bp Feature: gene Location: 2067-2285 bp Feature: gene Location: 2446-3030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449-2641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449-2641 bp Feature: domain Description: GIIM Note: maturase Location: 2722-2938 bp Feature: domain Description: GIIM Note: maturase Location: 2722-2938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABSOJ010000611.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_613, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 124-2027 bp Neighborhood of RT #1 [124, 2027] NIDO PEP-CTERM RVT-UG4 Feature: gene Location: 124-993 bp Feature: domain Description: NIDO Location: 604-796 bp Feature: domain Description: NIDO Location: 604-79 6 bp Feature: domain Description: PEP-CTERM Location: 913-976 bp Feature: domain Description: PEP-CTERM Location: 9 13-9 76 bp Feature: gene Location: 1020-1853 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1185-1635 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1185-1635 bp Feature: gene Location: 1857-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NIDO (smart00539), PEP-CTERM, RVT-UG4

Seq: JABSOJ010000694.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_696, whole genome shotgun sequence (1996 bp)
Overview 1 RT 1: 542-1783 bp Neighborhood of RT #1 [542, 1866] RVT-GII GIIM Feature: gene Location: 542-928 bp Feature: gene Location: 1054-1254 bp Feature: gene Location: 1300-1866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1315-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1315-1504 bp Feature: domain Description: GIIM Note: maturase Location: 1576-1783 bp Feature: domain Description: GIIM Note: maturase Location: 1576-1783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABSOJ010000711.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_713, whole genome shotgun sequence (1932 bp)
Overview 1 RT 1: 73-1929 bp Neighborhood of RT #1 [73, 1929] RVT_N RVT-GII Feature: gene Location: 73-1185 bp Feature: domain Description: RVT_N Location: 286-526 bp Feature: domain Description: RVT_N Location: 286-526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574-1171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574-11 71 bp Feature: gene Location: 1597-1929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JABSOJ010000718.1 Alteromonadaceae bacterium isolate DT_5 DT-Alteromonadaceae-2_scaffold_720, whole genome shotgun sequence (1901 bp)
Overview 1 RT 1: 207-1896 bp Neighborhood of RT #1 [207, 1898] RVT-DGRs Feature: gene Location: 207-1451 bp Feature: gene Location: 1563-1898 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1719-1896 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1719-1896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs