myRT

myRT report for GCA_013216015.1_ASM1321601v1

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Seq: JABSOI010000128.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_129, whole genome shotgun sequence (13412 bp)
Overview 1 RT 1: 9920-13408 bp Neighborhood of RT #1 [9920, 13410] Zn_Tnp_IS91 RVT_N RVT-GII GIIM RVT_N Feature: gene Location: 9920-10063 bp Feature: gene Location: 10226-10522 bp Feature: domain Description: Zn_Tnp_IS91 Location: 10274-10463 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 0274-1 0463 bp Feature: gene Location: 11036-12526 bp Feature: domain Description: RVT_N Location: 11081-11318 bp Feature: domain Description: RVT_N Location: 1 1 081 -1 1 31 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11369-11993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 369-1 1 993 bp Feature: domain Description: GIIM Note: maturase Location: 12044-12278 bp Feature: domain Description: GIIM Note: maturase Location: 1 2044-1 2278 bp Feature: gene Location: 12958-13410 bp Feature: domain Description: RVT_N Location: 13171-13408 bp Feature: domain Description: RVT_N Location: 1 31 71 -1 3408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABSOI010000145.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_146, whole genome shotgun sequence (9423 bp)
Overview 1 RT 1: 273-6658 bp Neighborhood of RT #1 [273, 6822] Pat_ExoU_VipD_like RVT-UG4 RimL Feature: gene Location: 273-1547 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 309-1176 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 309-1176 bp Feature: gene Location: 1793-2089 bp Feature: gene Location: 2395-3471 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2749-3214 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 749-32 14 bp Feature: gene Location: 3566-3790 bp Feature: gene Location: 3880-6822 bp Feature: domain Description: RimL Location: 6142-6658 bp Feature: domain Description: RimL Location: 6142 -6658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pat_ExoU_VipD_like (cd07207), RVT-UG4, RimL (COG1670)

Seq: JABSOI010000029.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_30, whole genome shotgun sequence (68666 bp)
Overview 1 RT 1: 1708-6383 bp Neighborhood of RT #1 [1708, 6383] TIGR02646 COG3950 RVT-Retrons PinE Feature: gene Location: 1708-2358 bp Feature: domain Description: TIGR02646 Location: 1777-2179 bp Feature: domain Description: TIGR02646 Location: 1777-2179 bp Feature: gene Location: 2355-4037 bp Feature: domain Description: COG3950 Location: 2562-3885 bp Feature: domain Description: COG3 950 Location: 2562-3 885 bp Feature: gene Location: 4039-5007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4168-4765 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4168-4765 bp Feature: gene Location: 5393-5938 bp Feature: domain Description: PinE Location: 5396-5933 bp Feature: domain Description: PinE Location: 53 96-593 3 bp Feature: gene Location: 6255-6383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PinE (COG1961)

Seq: JABSOI010000065.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_66, whole genome shotgun sequence (34253 bp)
Overview 1 RT 1: 28886-31808 bp Neighborhood of RT #1 [28886, 31808] Mor RVT-UG4 Feature: gene Location: 28886-29086 bp Feature: gene Location: 29620-29922 bp Feature: domain Description: Mor Location: 29680-29917 bp Feature: domain Description: Mor Location: 29680-29917 bp Feature: gene Location: 30067-31113 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30418-30883 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 304 18-30883 bp Feature: gene Location: 31329-31511 bp Feature: gene Location: 31557-31808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mor (pfam08765), RVT-UG4

Seq: JABSOI010000077.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_78, whole genome shotgun sequence (29265 bp)
Overview 1 RT 1: 77-9975 bp Neighborhood of RT #1 [77, 10466] Resolvase RVT-GII TraI_TIGR TraI_TIGR TraI_TIGR TraI_TIGR TraD_Ftype Feature: gene Location: 77-241 bp Feature: gene Location: 425-664 bp Feature: domain Description: Resolvase Location: 449-635 bp Feature: domain Description: Resolvase Location: 449-635 bp Feature: gene Location: 982-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1327 bp Feature: gene Location: 1443-8237 bp Feature: domain Description: TraI_TIGR Location: 1446-2742 bp Feature: domain Description: TraI_TIGR Location: 1446-2742 bp Feature: domain Description: TraI_TIGR Location: 2790-4350 bp Feature: domain Description: TraI_TIGR Location: 2790-435 0 bp Feature: domain Description: TraI_TIGR Location: 4377-6264 bp Feature: domain Description: TraI_TIGR Location: 4377-6264 bp Feature: domain Description: TraI_TIGR Location: 6327-8121 bp Feature: domain Description: TraI_TIGR Location: 6327-8121 bp Feature: gene Location: 8241-10466 bp Feature: domain Description: TraD_Ftype Location: 8277-9975 bp Feature: domain Description: TraD_Ftype Location: 8277-9975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-GII, TraI_TIGR (TIGR02760), TraD_Ftype (TIGR02759)

Seq: JABSOI010000084.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_85, whole genome shotgun sequence (27054 bp)
Overview 1 RT 1: 12002-15979 bp Neighborhood of RT #1 [12002, 15979] RVT-GII GIIM RVT-GII Feature: gene Location: 12002-12355 bp Feature: gene Location: 12762-13481 bp Feature: gene Location: 13573-14157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13576-13711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13576 -13711 bp Feature: domain Description: GIIM Note: maturase Location: 13759-13963 bp Feature: domain Description: GIIM Note: maturase Location: 13759-1396 3 bp Feature: gene Location: 14658-15182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14769-15156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1476 9-15156 bp Feature: gene Location: 15222-15353 bp Feature: gene Location: 15647-15979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABSOI010000096.1 Alteromonadaceae bacterium isolate DT_4 DT-Alteromonadaceae-1_scaffold_97, whole genome shotgun sequence (20858 bp)
Overview 1 RT 1: 14371-18149 bp Neighborhood of RT #1 [14371, 18172] RVT_N RVT-GII GIIM COG2361 upstrm_HI1419 Feature: gene Location: 14371-14751 bp Feature: gene Location: 14795-14986 bp Feature: gene Location: 15411-16901 bp Feature: domain Description: RVT_N Location: 15456-15693 bp Feature: domain Description: RVT_N Location: 15456-15693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15744-16368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157 44-16368 bp Feature: domain Description: GIIM Note: maturase Location: 16419-16653 bp Feature: domain Description: GIIM Note: maturase Location: 16419-16653 bp Feature: gene Location: 17060-17266 bp Feature: domain Description: COG2361 Location: 17069-17186 bp Feature: domain Description: COG2361 Location: 17 069-17 186 bp Feature: gene Location: 17822-18172 bp Feature: domain Description: upstrm_HI1419 Location: 17870-18149 bp Feature: domain Description: upstrm_HI1419 Location: 17 87 0-18149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG2361 (Uncharacterized conserved protein, contains HEPN domain ), upstrm_HI1419 (TIGR02683)