myRT

myRT report for GCA_013240325.1_ASM1324032v1

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Seq: JAATIF010000001.1 Pseudomonas aeruginosa strain DVT639, whole genome shotgun sequence (7055928 bp)
Overview 1 RT 1: 616712-628595 bp 2 RT 2: 644854-653703 bp 3 RT 3: 2856843-2862787 bp 4 RT 4: 4933089-4939239 bp 5 RT 5: 5366804-5372680 bp 6 RT 6: 5376710-5380785 bp Neighborhood of RT #1 [616712, 628597] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [644854, 653732] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [2856843, 2862787] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #4 [4933089, 4939241] PHA02517 InsE RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF umuC Neighborhood of RT #5 [5366804, 5372680] conj_PilL HepA SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #6 [5376710, 5380785] DUF3085 RVT-GII GIIM Feature: gene Location: 616712-617944 bp Feature: gene Location: 618419-619480 bp Feature: domain Description: INT_Rci_Hp1_C Location: 618929-619430 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 61 8929-61 9430 bp Feature: gene Location: 620134-621819 bp Feature: RT Description: RVT_N Location: 620191-620431 bp Feature: RT Description: RVT_N Location: 6201 91 -620431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620479-621115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620479-621 1 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 621169-621400 bp Feature: domain Description: GIIM Note: maturase Location: 621 1 69-621 400 bp Feature: domain Description: HNH Note: nucleases Location: 621652-621790 bp Feature: domain Description: HNH Note: nucleases Location: 621 652-621 790 bp Feature: gene Location: 622900-626637 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 623008-623665 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 623008-623665 bp Feature: domain Description: PRK09776 Location: 623878-624349 bp Feature: domain Description: PRK09776 Location: 623878-624349 bp Feature: domain Description: PAS Location: 624394-624931 bp Feature: domain Description: PAS Location: 624394-624931 bp Feature: domain Description: PRK10060 Location: 624940-626587 bp Feature: domain Description: PRK1 0060 Location: 624940-626587 bp Feature: gene Location: 626744-628597 bp Feature: domain Description: PRK05658 Location: 626756-628595 bp Feature: domain Description: PRK05658 Location: 626756-628595 bp Feature: gene Location: 644854-646068 bp Feature: domain Description: PRK10770 Location: 644866-646060 bp Feature: domain Description: PRK1 0770 Location: 644866-646060 bp Feature: gene Location: 646127-648928 bp Feature: domain Description: LptD Location: 646322-648914 bp Feature: domain Description: LptD Location: 646322-64891 4 bp Feature: gene Location: 649061-650773 bp Feature: RT Description: RVT_N Location: 649118-649361 bp Feature: RT Description: RVT_N Location: 6491 1 8-649361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649406-650039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649406-650039 bp Feature: domain Description: YkfC Location: 650252-650402 bp Feature: domain Description: YkfC Location: 650252-650402 bp Feature: domain Description: HNH Note: nucleases Location: 650579-650717 bp Feature: domain Description: HNH Note: nucleases Location: 650579-65071 7 bp Feature: gene Location: 652045-653061 bp Feature: domain Description: COG3178 Location: 652048-653047 bp Feature: domain Description: COG31 78 Location: 652048-653047 bp Feature: gene Location: 653058-653732 bp Feature: domain Description: NTP_transferase_like_1 Location: 653064-653703 bp Feature: domain Description: NTP_transferase_like_1 Location: 653064-653703 bp Feature: gene Location: 2856843-2857565 bp Feature: domain Description: resist_ArsH Location: 2856867-2857521 bp Feature: domain Description: resist_ArsH Location: 2856867-2857521 bp Feature: gene Location: 2857624-2858883 bp Feature: domain Description: KOG0389 Location: 2857654-2857774 bp Feature: domain Description: KOG0389 Location: 2857654-2857774 bp Feature: domain Description: SF2_C_SNF Location: 2858332-2858719 bp Feature: domain Description: SF2_C_SNF Location: 2858332-285871 9 bp Feature: gene Location: 2858951-2860669 bp Feature: RT Description: RVT_N Location: 2859008-2859245 bp Feature: RT Description: RVT_N Location: 2859008-2859245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2859296-2859947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2859296-2859947 bp Feature: domain Description: GIIM Note: maturase Location: 2860001-2860232 bp Feature: domain Description: GIIM Note: maturase Location: 2860001 -2860232 bp Feature: domain Description: HNHc Note: nucleases Location: 2860466-2860622 bp Feature: domain Description: HNHc Note: nucleases Location: 2860466-2860622 bp Feature: gene Location: 2861266-2862321 bp Feature: domain Description: DEXHc_Snf Location: 2861485-2861743 bp Feature: domain Description: DEXHc_Snf Location: 2861 485-2861 743 bp Feature: gene Location: 2862458-2862787 bp Feature: gene Location: 4933089-4933934 bp Feature: domain Description: PHA02517 Location: 4933131-4933908 bp Feature: domain Description: PHA0251 7 Location: 49331 31 -4933908 bp Feature: gene Location: 4933943-4934251 bp Feature: domain Description: InsE Location: 4933946-4934243 bp Feature: domain Description: InsE Location: 4933946-4934243 bp Feature: gene Location: 4934403-4936121 bp Feature: RT Description: RVT_N Location: 4934460-4934697 bp Feature: RT Description: RVT_N Location: 4934460-4934697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4934748-4935399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4934748-4935399 bp Feature: domain Description: GIIM Note: maturase Location: 4935453-4935684 bp Feature: domain Description: GIIM Note: maturase Location: 4935453-4935684 bp Feature: domain Description: HNHc Note: nucleases Location: 4935918-4936074 bp Feature: domain Description: HNHc Note: nucleases Location: 493591 8-4936074 bp Feature: gene Location: 4936189-4937448 bp Feature: domain Description: KOG0387 Location: 4936228-4936354 bp Feature: domain Description: KOG0387 Location: 4936228-4936354 bp Feature: domain Description: SF2_C_SNF Location: 4936903-4937284 bp Feature: domain Description: SF2_C_SNF Location: 4936903-4937284 bp Feature: gene Location: 4938132-4939241 bp Feature: domain Description: umuC Location: 4938135-4939239 bp Feature: domain Description: umuC Location: 49381 35-4939239 bp Feature: gene Location: 5366804-5367373 bp Feature: domain Description: conj_PilL Location: 5366975-5367278 bp Feature: domain Description: conj_PilL Location: 5366975-5367278 bp Feature: gene Location: 5367572-5368831 bp Feature: domain Description: HepA Location: 5367587-5367728 bp Feature: domain Description: HepA Location: 5367587-5367728 bp Feature: domain Description: SF2_C_SNF Location: 5368271-5368667 bp Feature: domain Description: SF2_C_SNF Location: 5368271 -5368667 bp Feature: gene Location: 5368899-5370617 bp Feature: RT Description: RVT_N Location: 5368956-5369193 bp Feature: RT Description: RVT_N Location: 5368956-53691 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5369244-5369895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5369244-5369895 bp Feature: domain Description: GIIM Note: maturase Location: 5369949-5370180 bp Feature: domain Description: GIIM Note: maturase Location: 5369949-53701 80 bp Feature: domain Description: HNHc Note: nucleases Location: 5370414-5370570 bp Feature: domain Description: HNHc Note: nucleases Location: 537041 4-5370570 bp Feature: gene Location: 5371214-5372275 bp Feature: domain Description: DEXHc_Snf Location: 5371439-5371694 bp Feature: domain Description: DEXHc_Snf Location: 5371 439-5371 694 bp Feature: gene Location: 5372375-5372680 bp Feature: gene Location: 5376710-5377075 bp Feature: domain Description: DUF3085 Location: 5376776-5377046 bp Feature: domain Description: DUF3085 Location: 5376776-5377046 bp Feature: gene Location: 5377141-5377938 bp Feature: gene Location: 5378278-5379477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5378443-5379058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5378443-5379058 bp Feature: domain Description: GIIM Note: maturase Location: 5379115-5379331 bp Feature: domain Description: GIIM Note: maturase Location: 53791 1 5-5379331 bp Feature: gene Location: 5379070-5379714 bp Feature: gene Location: 5380069-5380785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), HNHc (smart00507), DEXHc_Snf (cd17919)
PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), umuC (PRK03609), conj_PilL (TIGR03748), HepA (COG0553), DUF3085 (pfam11284)