myRT

myRT report for GCA_013240385.1_ASM1324038v1

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Seq: JAATII010000001.1 Pseudomonas aeruginosa strain DVT426, whole genome shotgun sequence (6552356 bp)
Overview 1 RT 1: 640704-650346 bp 2 RT 2: 666604-675426 bp Neighborhood of RT #1 [640704, 650348] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [666604, 675455] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 640704-641111 bp Feature: domain Description: INT_Rci_Hp1_C Location: 640743-641058 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 640743-641 058 bp Feature: gene Location: 641136-641450 bp Feature: gene Location: 641885-643570 bp Feature: RT Description: RVT_N Location: 641942-642182 bp Feature: RT Description: RVT_N Location: 641 942-6421 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642230-642866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642230-642866 bp Feature: domain Description: GIIM Note: maturase Location: 642920-643151 bp Feature: domain Description: GIIM Note: maturase Location: 642920-6431 51 bp Feature: domain Description: HNH Note: nucleases Location: 643403-643541 bp Feature: domain Description: HNH Note: nucleases Location: 643403-643541 bp Feature: gene Location: 644651-648388 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 644759-645416 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 644759-64541 6 bp Feature: domain Description: PRK09776 Location: 645629-646100 bp Feature: domain Description: PRK09776 Location: 645629-6461 00 bp Feature: domain Description: PAS Location: 646172-646682 bp Feature: domain Description: PAS Location: 6461 72-646682 bp Feature: domain Description: PRK10060 Location: 646691-648338 bp Feature: domain Description: PRK1 0060 Location: 646691 -648338 bp Feature: gene Location: 648495-650348 bp Feature: domain Description: PRK05658 Location: 648507-650346 bp Feature: domain Description: PRK05658 Location: 648507-650346 bp Feature: gene Location: 666604-667818 bp Feature: domain Description: PRK10770 Location: 666616-667810 bp Feature: domain Description: PRK1 0770 Location: 66661 6-66781 0 bp Feature: gene Location: 667877-670651 bp Feature: domain Description: LptD Location: 668072-670637 bp Feature: domain Description: LptD Location: 668072-670637 bp Feature: gene Location: 670784-672496 bp Feature: RT Description: RVT_N Location: 670841-671084 bp Feature: RT Description: RVT_N Location: 670841 -671 084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671129-671765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 1 29-671 765 bp Feature: domain Description: YkfC Location: 671975-672125 bp Feature: domain Description: YkfC Location: 671 975-6721 25 bp Feature: domain Description: HNH Note: nucleases Location: 672302-672440 bp Feature: domain Description: HNH Note: nucleases Location: 672302-672440 bp Feature: gene Location: 673768-674784 bp Feature: domain Description: COG3178 Location: 673771-674770 bp Feature: domain Description: COG31 78 Location: 673771 -674770 bp Feature: gene Location: 674781-675455 bp Feature: domain Description: NTP_transferase_like_1 Location: 674787-675426 bp Feature: domain Description: NTP_transferase_like_1 Location: 674787-675426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)