myRT

myRT report for GCA_013248875.1_ASM1324887v1

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Seq: JABRVR010000002.1 Shewanella sp. DC2-4 contig_02, whole genome shotgun sequence (5020246 bp)
Overview 1 RT 1: 15716-19443 bp 2 RT 2: 593454-596968 bp 3 RT 3: 1354617-1358796 bp 4 RT 4: 1990953-1992685 bp 5 RT 5: 3994610-3999322 bp Neighborhood of RT #1 [15716, 19443] DUF4238 RVT-GII GIIM RVT_N RVT-GII Neighborhood of RT #2 [593454, 596968] RVT_N RVT-GII GIIM Neighborhood of RT #3 [1354617, 1358796] DUF1097 Tar RVT-GII GIIM RVT-GII RVT_N Neighborhood of RT #4 [1990953, 1992687] MATE_MepA_like RVT-GII group_II_RT_mat Neighborhood of RT #5 [3994610, 3999322] TIGR00255 Arm-DNA-bind_3 INT_P4_C RVT-UG28 Feature: gene Location: 15716-15907 bp Feature: gene Location: 16002-16883 bp Feature: domain Description: DUF4238 Location: 16017-16716 bp Feature: domain Description: DUF4238 Location: 1 601 7-1 671 6 bp Feature: gene Location: 17097-17729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17109-17220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 09-1 7220 bp Feature: domain Description: GIIM Note: maturase Location: 17280-17505 bp Feature: domain Description: GIIM Note: maturase Location: 1 7280-1 7505 bp Feature: gene Location: 17785-18570 bp Feature: domain Description: RVT_N Location: 17833-18076 bp Feature: domain Description: RVT_N Location: 1 7833-1 8076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18121-18556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 21 -1 8556 bp Feature: gene Location: 18556-18957 bp Feature: gene Location: 19153-19443 bp Feature: gene Location: 593454-593645 bp Feature: gene Location: 593649-593999 bp Feature: gene Location: 594140-595612 bp Feature: domain Description: RVT_N Location: 594188-594431 bp Feature: domain Description: RVT_N Location: 5941 88-594431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594476-595103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594476-5951 03 bp Feature: domain Description: GIIM Note: maturase Location: 595163-595388 bp Feature: domain Description: GIIM Note: maturase Location: 5951 63-595388 bp Feature: gene Location: 595598-595999 bp Feature: gene Location: 596579-596968 bp Feature: gene Location: 1354617-1355108 bp Feature: domain Description: DUF1097 Location: 1354641-1355040 bp Feature: domain Description: DUF1 097 Location: 1 354641 -1 355040 bp Feature: gene Location: 1355213-1356664 bp Feature: domain Description: Tar Location: 1355396-1356656 bp Feature: domain Description: Tar Location: 1 355396-1 356656 bp Feature: gene Location: 1356935-1357567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356947-1357058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 356947-1 357058 bp Feature: domain Description: GIIM Note: maturase Location: 1357118-1357343 bp Feature: domain Description: GIIM Note: maturase Location: 1 3571 1 8-1 357343 bp Feature: gene Location: 1357623-1358030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1357626-1358016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 357626-1 35801 6 bp Feature: gene Location: 1358068-1358409 bp Feature: domain Description: RVT_N Location: 1358116-1358359 bp Feature: domain Description: RVT_N Location: 1 3581 1 6-1 358359 bp Feature: gene Location: 1358395-1358796 bp Feature: gene Location: 1990953-1991516 bp Feature: gene Location: 1991513-1991857 bp Feature: domain Description: MATE_MepA_like Location: 1991519-1991792 bp Feature: domain Description: MATE_MepA_like Location: 1 991 51 9-1 991 792 bp Feature: gene Location: 1991854-1992180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1991857-1992163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 991 857-1 9921 63 bp Feature: gene Location: 1992190-1992366 bp Feature: gene Location: 1992436-1992687 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1992520-1992685 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 992520-1 992685 bp Feature: gene Location: 3994610-3995500 bp Feature: domain Description: TIGR00255 Location: 3994640-3995498 bp Feature: domain Description: TIGR00255 Location: 3994640-3995498 bp Feature: gene Location: 3995651-3996940 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3995723-3995972 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3995723-3995972 bp Feature: domain Description: INT_P4_C Location: 3996329-3996905 bp Feature: domain Description: INT_P4_C Location: 3996329-3996905 bp Feature: gene Location: 3997231-3998730 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 3997519-3998155 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 399751 9-39981 55 bp Feature: gene Location: 3998996-3999127 bp Feature: gene Location: 3999164-3999322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4238 (pfam14022), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), DUF1097 (pfam06496), Tar (COG0840), MATE_MepA_like (cd13143), group_II_RT_mat (TIGR04416), TIGR00255 (TIGR00255 family protein), Arm-DNA-bind_3 (pfam13356)
INT_P4_C (cd00801), RVT-UG28