myRT

myRT report for GCA_013248905.1_ASM1324890v1

Download annotations/find similar RTs

Seq: JABRVS010000001.1 Shewanella sp. VB17 contig_01, whole genome shotgun sequence (5163726 bp)
Overview 1 RT 1: 1323664-1328979 bp 2 RT 2: 1480038-1486868 bp 3 RT 3: 1782162-1788014 bp 4 RT 4: 2015303-2019877 bp 5 RT 5: 2117109-2121968 bp 6 RT 6: 3088841-3092991 bp 7 RT 7: 3593567-3598712 bp 8 RT 8: 3783684-3786054 bp 9 RT 9: 4490625-4493986 bp 10 RT 10: 4540081-4546049 bp Neighborhood of RT #1 [1323664, 1328990] OMP_w_GlyGly RVT-GII RVT-GII GIIM DUF2390 PRK10636 Neighborhood of RT #2 [1480038, 1486894] COG3547 RVT-GII GIIM COG3547 S4 PseudoU_synth_RluF Neighborhood of RT #3 [1782162, 1788019] ptsS_2 RVT-GII RVT-GII GIIM PRK11573 YpjD Neighborhood of RT #4 [2015303, 2019877] PRK09287 RVT-GII RVT-GII GIIM GST_N_Omega_like GST_C_5 Neighborhood of RT #5 [2117109, 2121997] DDE_Tnp_1_3 RVT-GII GIIM OafA PRK10860 Neighborhood of RT #6 [3088841, 3092991] RVT-GII GIIM RVT-GII Neighborhood of RT #7 [3593567, 3598712] ligand_gated_channel GIIM RVT-GII Neighborhood of RT #8 [3783684, 3786054] PRK11295 GIIM RVT-GII Neighborhood of RT #9 [4490625, 4493986] DDE_Tnp_1_5 RVT-GII GIIM RVT-GII Neighborhood of RT #10 [4540081, 4546066] tolC RVT-GII GIIM RVT-GII GH18_PF-ChiA-like GH18_PF-ChiA-like Feature: gene Location: 1323664-1324398 bp Feature: domain Description: OMP_w_GlyGly Location: 1323673-1324396 bp Feature: domain Description: OMP_w_GlyGly Location: 1 323673-1 324396 bp Feature: gene Location: 1324802-1325023 bp Feature: gene Location: 1325144-1325500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1325402-1325495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 325402-1 325495 bp Feature: gene Location: 1325734-1326462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1325740-1326025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 325740-1 326025 bp Feature: domain Description: GIIM Note: maturase Location: 1326073-1326292 bp Feature: domain Description: GIIM Note: maturase Location: 1 326073-1 326292 bp Feature: gene Location: 1326555-1326992 bp Feature: domain Description: DUF2390 Location: 1326588-1326882 bp Feature: domain Description: DUF2390 Location: 1 326588-1 326882 bp Feature: gene Location: 1327086-1328990 bp Feature: domain Description: PRK10636 Location: 1327089-1328979 bp Feature: domain Description: PRK1 0636 Location: 1 327089-1 328979 bp Feature: gene Location: 1480038-1480889 bp Feature: gene Location: 1480961-1481998 bp Feature: domain Description: COG3547 Location: 1480979-1481951 bp Feature: domain Description: COG3547 Location: 1 480979-1 481 951 bp Feature: gene Location: 1483125-1484330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483251-1483869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 483251 -1 483869 bp Feature: domain Description: GIIM Note: maturase Location: 1483917-1484121 bp Feature: domain Description: GIIM Note: maturase Location: 1 48391 7-1 4841 21 bp Feature: gene Location: 1484788-1485819 bp Feature: domain Description: COG3547 Location: 1484803-1485757 bp Feature: domain Description: COG3547 Location: 1 484803-1 485757 bp Feature: gene Location: 1486154-1486894 bp Feature: domain Description: S4 Location: 1486178-1486280 bp Feature: domain Description: S4 Location: 1 4861 78-1 486280 bp Feature: domain Description: PseudoU_synth_RluF Location: 1486382-1486868 bp Feature: domain Description: PseudoU_synth_RluF Location: 1 486382-1 486868 bp Feature: gene Location: 1782162-1783133 bp Feature: domain Description: ptsS_2 Location: 1782165-1783083 bp Feature: domain Description: ptsS_2 Location: 1 7821 65-1 783083 bp Feature: gene Location: 1783549-1783770 bp Feature: gene Location: 1783936-1784247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784149-1784242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7841 49-1 784242 bp Feature: gene Location: 1784481-1785209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784487-1784772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 784487-1 784772 bp Feature: domain Description: GIIM Note: maturase Location: 1784820-1785039 bp Feature: domain Description: GIIM Note: maturase Location: 1 784820-1 785039 bp Feature: gene Location: 1785732-1787009 bp Feature: domain Description: PRK11573 Location: 1785783-1786983 bp Feature: domain Description: PRK1 1 573 Location: 1 785783-1 786983 bp Feature: gene Location: 1787231-1788019 bp Feature: domain Description: YpjD Location: 1787237-1788014 bp Feature: domain Description: YpjD Location: 1 787237-1 78801 4 bp Feature: gene Location: 2015303-2016856 bp Feature: domain Description: PRK09287 Location: 2015357-2016833 bp Feature: domain Description: PRK09287 Location: 201 5357-201 6833 bp Feature: gene Location: 2017255-2017563 bp Feature: gene Location: 2017596-2018279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2017854-2018175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 7854-201 81 75 bp Feature: gene Location: 2018312-2018914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018315-2018477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 831 5-201 8477 bp Feature: domain Description: GIIM Note: maturase Location: 2018525-2018744 bp Feature: domain Description: GIIM Note: maturase Location: 201 8525-201 8744 bp Feature: gene Location: 2018997-2019683 bp Feature: domain Description: GST_N_Omega_like Location: 2019009-2019228 bp Feature: domain Description: GST_N_Omega_like Location: 201 9009-201 9228 bp Feature: domain Description: GST_C_5 Location: 2019273-2019603 bp Feature: domain Description: GST_C_5 Location: 201 9273-201 9603 bp Feature: gene Location: 2019689-2019877 bp Feature: gene Location: 2117109-2117258 bp Feature: gene Location: 2117294-2118181 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2117609-2118068 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 21 1 7609-21 1 8068 bp Feature: gene Location: 2118367-2119248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2118385-2118811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 8385-21 1 881 1 bp Feature: domain Description: GIIM Note: maturase Location: 2118859-2119078 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 8859-21 1 9078 bp Feature: gene Location: 2119430-2121361 bp Feature: domain Description: OafA Location: 2119436-2120453 bp Feature: domain Description: OafA Location: 21 1 9436-21 20453 bp Feature: gene Location: 2121509-2121997 bp Feature: domain Description: PRK10860 Location: 2121512-2121968 bp Feature: domain Description: PRK1 0860 Location: 21 21 51 2-21 21 968 bp Feature: gene Location: 3088841-3089008 bp Feature: gene Location: 3089127-3090608 bp Feature: gene Location: 3091120-3092001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3091138-3091564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3091 1 38-3091 564 bp Feature: domain Description: GIIM Note: maturase Location: 3091612-3091831 bp Feature: domain Description: GIIM Note: maturase Location: 3091 61 2-3091 831 bp Feature: gene Location: 3092093-3092392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092306-3092375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092306-3092375 bp Feature: gene Location: 3092589-3092807 bp Feature: gene Location: 3092824-3092991 bp Feature: gene Location: 3593567-3596383 bp Feature: domain Description: ligand_gated_channel Location: 3593744-3596381 bp Feature: domain Description: ligand_gated_channel Location: 3593744-3596381 bp Feature: gene Location: 3596646-3597014 bp Feature: domain Description: GIIM Note: maturase Location: 3596652-3596847 bp Feature: domain Description: GIIM Note: maturase Location: 3596652-3596847 bp Feature: gene Location: 3597073-3597963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3597331-3597943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3597331 -3597943 bp Feature: gene Location: 3598111-3598326 bp Feature: gene Location: 3598467-3598712 bp Feature: gene Location: 3783684-3784055 bp Feature: domain Description: PRK11295 Location: 3783738-3784053 bp Feature: domain Description: PRK1 1 295 Location: 3783738-3784053 bp Feature: gene Location: 3784189-3784644 bp Feature: domain Description: GIIM Note: maturase Location: 3784255-3784474 bp Feature: domain Description: GIIM Note: maturase Location: 3784255-3784474 bp Feature: gene Location: 3784695-3785507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784953-3785487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784953-3785487 bp Feature: gene Location: 3785655-3785870 bp Feature: gene Location: 3785887-3786054 bp Feature: gene Location: 4490625-4490765 bp Feature: gene Location: 4490956-4491873 bp Feature: domain Description: DDE_Tnp_1_5 Location: 4491013-4491346 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 4491 01 3-4491 346 bp Feature: gene Location: 4491963-4492844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4491981-4492407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4491 981 -4492407 bp Feature: domain Description: GIIM Note: maturase Location: 4492455-4492674 bp Feature: domain Description: GIIM Note: maturase Location: 4492455-4492674 bp Feature: gene Location: 4492924-4493280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493182-4493275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44931 82-4493275 bp Feature: gene Location: 4493387-4493623 bp Feature: gene Location: 4493786-4493986 bp Feature: gene Location: 4540081-4540209 bp Feature: gene Location: 4540278-4541621 bp Feature: domain Description: tolC Location: 4540284-4541613 bp Feature: domain Description: tolC Location: 4540284-4541 61 3 bp Feature: gene Location: 4541747-4542475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4541753-4542038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4541 753-4542038 bp Feature: domain Description: GIIM Note: maturase Location: 4542086-4542305 bp Feature: domain Description: GIIM Note: maturase Location: 4542086-4542305 bp Feature: gene Location: 4542381-4543019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542594-4542915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542594-454291 5 bp Feature: gene Location: 4543450-4543617 bp Feature: gene Location: 4543856-4546066 bp Feature: domain Description: GH18_PF-ChiA-like Location: 4544759-4545134 bp Feature: domain Description: GH1 8_PF-ChiA-like Location: 4544759-45451 34 bp Feature: domain Description: GH18_PF-ChiA-like Location: 4545449-4546049 bp Feature: domain Description: GH1 8_PF-ChiA-like Location: 4545449-4546049 bp Sorry, your browser does not support inline SVG.
Associated domains: