myRT

myRT report for GCA_013276735.1_ASM1327673v1

Download annotations/find similar RTs

Seq: VMLO01000106.1 Streptococcus sp. 1559 1559_S34_L001_R1_001_(paired)_contig_106, whole genome shotgun sequence (7457 bp)
Overview 1 RT 1: 5560-7313 bp Neighborhood of RT #1 [5560, 7324] YqgV RVT-GII GIIM RVT-GII Feature: gene Location: 5560-5901 bp Feature: domain Description: YqgV Location: 5614-5896 bp Feature: domain Description: YqgV Location: 561 4-5896 bp Feature: gene Location: 5904-6044 bp Feature: gene Location: 6145-7005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6148-6559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 48-6559 bp Feature: domain Description: GIIM Note: maturase Location: 6613-6826 bp Feature: domain Description: GIIM Note: maturase Location: 661 3-6826 bp Feature: gene Location: 7022-7324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7226-7313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7226-731 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgV (COG0011), RVT-GII, GIIM (pfam08388)

Seq: VMLO01000127.1 Streptococcus sp. 1559 1559_S34_L001_R1_001_(paired)_contig_127, whole genome shotgun sequence (2029 bp)
Overview 1 RT 1: 2-1772 bp Neighborhood of RT #1 [2, 1963] PFLA RVT-GII GIIM Feature: gene Location: 2-136 bp Feature: domain Description: PFLA Location: 8-95 bp Feature: domain Description: PFLA Location: 8-95 bp Feature: gene Location: 686-1963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890-1505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890-1505 bp Feature: domain Description: GIIM Note: maturase Location: 1559-1772 bp Feature: domain Description: GIIM Note: maturase Location: 1559-1772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLA (TIGR02493), RVT-GII, GIIM (pfam08388)

Seq: VMLO01000024.1 Streptococcus sp. 1559 1559_S34_L001_R1_001_(paired)_contig_24, whole genome shotgun sequence (16934 bp)
Overview 1 RT 1: 11327-16606 bp Neighborhood of RT #1 [11327, 16797] rexB_recomb INT_ICEBs1_C_like RVT-GII GIIM Feature: gene Location: 11327-14626 bp Feature: domain Description: rexB_recomb Location: 11357-14579 bp Feature: domain Description: rexB_recomb Location: 113 57-14579 bp Feature: gene Location: 15175-15423 bp Feature: domain Description: INT_ICEBs1_C_like Location: 15193-15358 bp Feature: domain Description: INT_ICEBs1_C_like Location: 15193 -153 58 bp Feature: gene Location: 15520-16797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15724-16339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15724-163 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 16393-16606 bp Feature: domain Description: GIIM Note: maturase Location: 163 93 -16606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rexB_recomb (TIGR02774), INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388)

Seq: VMLO01000078.1 Streptococcus sp. 1559 1559_S34_L001_R1_001_(paired)_contig_78, whole genome shotgun sequence (6182 bp)
Overview 1 RT 1: 152-3496 bp Neighborhood of RT #1 [152, 3537] RVT-GII RVT-GII PRK00106 SR_TndX_transposase Feature: gene Location: 152-514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155-512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155-512 bp Feature: gene Location: 531-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-822 bp Feature: gene Location: 1537-3150 bp Feature: domain Description: PRK00106 Location: 1546-3148 bp Feature: domain Description: PRK00106 Location: 154 6-314 8 bp Feature: gene Location: 3202-3537 bp Feature: domain Description: SR_TndX_transposase Location: 3241-3496 bp Feature: domain Description: SR_TndX_transposase Location: 324 1-34 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00106 (ribonuclease Y), SR_TndX_transposase (cd03770)