myRT

myRT report for GCA_013277255.1_ASM1327725v1

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Seq: VMMK01000030.1 Streptococcus sp. 2154 2154-04_R1_(paired)_contig_30, whole genome shotgun sequence (24147 bp)
Overview 1 RT 1: 121-3465 bp Neighborhood of RT #1 [121, 3506] RVT-GII RVT-GII PRK00106 SR_TndX_transposase Feature: gene Location: 121-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124-481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24-481 bp Feature: gene Location: 500-802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704-791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704-791 bp Feature: gene Location: 1506-3119 bp Feature: domain Description: PRK00106 Location: 1515-3117 bp Feature: domain Description: PRK001 06 Location: 1 51 5-31 1 7 bp Feature: gene Location: 3171-3506 bp Feature: domain Description: SR_TndX_transposase Location: 3210-3465 bp Feature: domain Description: SR_TndX_transposase Location: 321 0-3465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00106 (ribonuclease Y), SR_TndX_transposase (cd03770)

Seq: VMMK01000034.1 Streptococcus sp. 2154 2154-04_R1_(paired)_contig_34, whole genome shotgun sequence (54951 bp)
Overview 1 RT 1: 7-2937 bp Neighborhood of RT #1 [7, 2939] RVT-GII RVT-GII COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 COG4466 Feature: gene Location: 7-372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-367 bp Feature: gene Location: 389-691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593-680 bp Feature: gene Location: 1466-2584 bp Feature: domain Description: COG3942 Location: 1472-2120 bp Feature: domain Description: COG3942 Location: 1472 -2 12 0 bp Feature: domain Description: CW_binding_1 Location: 2297-2345 bp Feature: domain Description: CW_binding_1 Location: 2 2 97-2 345 bp Feature: domain Description: CW_binding_1 Location: 2354-2408 bp Feature: domain Description: CW_binding_1 Location: 2 354-2 408 bp Feature: domain Description: CW_binding_1 Location: 2414-2468 bp Feature: domain Description: CW_binding_1 Location: 2 414-2 468 bp Feature: domain Description: CW_binding_1 Location: 2474-2525 bp Feature: domain Description: CW_binding_1 Location: 2 474-2 52 5 bp Feature: gene Location: 2673-2939 bp Feature: domain Description: COG4466 Location: 2688-2937 bp Feature: domain Description: COG4466 Location: 2 688-2 937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3942 (Surface antigen ), CW_binding_1 (pfam01473), RVT-GII, COG4466 (Uncharacterized protein Veg, DUF1021 family )

Seq: VMMK01000057.1 Streptococcus sp. 2154 2154-04_R1_(paired)_contig_57, whole genome shotgun sequence (13077 bp)
Overview 1 RT 1: 7310-12600 bp Neighborhood of RT #1 [7310, 12791] rexB_recomb INT_ICEBs1_C_like RVT-GII GIIM Feature: gene Location: 7310-10609 bp Feature: domain Description: rexB_recomb Location: 7340-10562 bp Feature: domain Description: rexB_recomb Location: 73 40-10562 bp Feature: gene Location: 11169-11417 bp Feature: domain Description: INT_ICEBs1_C_like Location: 11187-11352 bp Feature: domain Description: INT_ICEBs1_C_like Location: 11187-113 52 bp Feature: gene Location: 11514-12791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11718-12333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11718-123 3 3 bp Feature: domain Description: GIIM Note: maturase Location: 12387-12600 bp Feature: domain Description: GIIM Note: maturase Location: 123 87-12600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388), rexB_recomb (TIGR02774)

Seq: VMMK01000059.1 Streptococcus sp. 2154 2154-04_R1_(paired)_contig_59, whole genome shotgun sequence (7753 bp)
Overview 1 RT 1: 5586-7246 bp Neighborhood of RT #1 [5586, 7437] YqgV RVT-GII GIIM Feature: gene Location: 5586-5927 bp Feature: domain Description: YqgV Location: 5640-5922 bp Feature: domain Description: YqgV Location: 564 0-5922 bp Feature: gene Location: 5930-6070 bp Feature: gene Location: 6160-7437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6364-6979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6364 -6979 bp Feature: domain Description: GIIM Note: maturase Location: 7033-7246 bp Feature: domain Description: GIIM Note: maturase Location: 7033-724 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgV (COG0011), RVT-GII, GIIM (pfam08388)