myRT

myRT report for GCA_013277375.1_ASM1327737v1

Download annotations/find similar RTs

Seq: VMMV01000124.1 Streptococcus sp. 3613 3613_S4_L001_R1_001_(paired)_contig_124, whole genome shotgun sequence (6917 bp)
Overview 1 RT 1: 5617-6736 bp Neighborhood of RT #1 [5617, 6915] YqgV RVT-GII GIIM Feature: gene Location: 5617-5958 bp Feature: domain Description: YqgV Location: 5671-5953 bp Feature: domain Description: YqgV Location: 5671 -5953 bp Feature: gene Location: 5961-6101 bp Feature: gene Location: 6202-6915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6211-6469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621 1 -6469 bp Feature: domain Description: GIIM Note: maturase Location: 6523-6736 bp Feature: domain Description: GIIM Note: maturase Location: 6523-6736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgV (COG0011), RVT-GII, GIIM (pfam08388)

Seq: VMMV01000018.1 Streptococcus sp. 3613 3613_S4_L001_R1_001_(paired)_contig_18, whole genome shotgun sequence (55668 bp)
Overview 1 RT 1: 3-2737 bp Neighborhood of RT #1 [3, 2739] RVT-GII RVT-GII COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 COG4466 Feature: gene Location: 3-221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-2 2 2 bp Feature: gene Location: 238-540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 -52 9 bp Feature: gene Location: 1266-2384 bp Feature: domain Description: COG3942 Location: 1272-1920 bp Feature: domain Description: COG3942 Location: 12 72 -192 0 bp Feature: domain Description: CW_binding_1 Location: 2097-2145 bp Feature: domain Description: CW_binding_1 Location: 2 097-2 145 bp Feature: domain Description: CW_binding_1 Location: 2154-2208 bp Feature: domain Description: CW_binding_1 Location: 2 154-2 2 08 bp Feature: domain Description: CW_binding_1 Location: 2214-2268 bp Feature: domain Description: CW_binding_1 Location: 2 2 14-2 2 68 bp Feature: domain Description: CW_binding_1 Location: 2274-2325 bp Feature: domain Description: CW_binding_1 Location: 2 2 74-2 32 5 bp Feature: gene Location: 2473-2739 bp Feature: domain Description: COG4466 Location: 2488-2737 bp Feature: domain Description: COG4466 Location: 2 488-2 737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3942 (Surface antigen ), CW_binding_1 (pfam01473), RVT-GII, COG4466 (Uncharacterized protein Veg, DUF1021 family )

Seq: VMMV01000034.1 Streptococcus sp. 3613 3613_S4_L001_R1_001_(paired)_contig_34, whole genome shotgun sequence (13702 bp)
Overview 1 RT 1: 2-3165 bp Neighborhood of RT #1 [2, 3206] RVT-GII RVT-GII PRK00106 SR_TndX_transposase Feature: gene Location: 2-184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-182 bp Feature: gene Location: 201-503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-492 bp Feature: gene Location: 1206-2819 bp Feature: domain Description: PRK00106 Location: 1215-2817 bp Feature: domain Description: PRK00106 Location: 1215-2817 bp Feature: gene Location: 2871-3206 bp Feature: domain Description: SR_TndX_transposase Location: 2910-3165 bp Feature: domain Description: SR_TndX_transposase Location: 2910-3 165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00106 (ribonuclease Y), RVT-GII

Seq: VMMV01000048.1 Streptococcus sp. 3613 3613_S4_L001_R1_001_(paired)_contig_48, whole genome shotgun sequence (26057 bp)
Overview 1 RT 1: 24831-26054 bp Neighborhood of RT #1 [24831, 26056] HTH_29 RVT-GII Feature: gene Location: 24831-25364 bp Feature: domain Description: HTH_29 Location: 24876-25047 bp Feature: domain Description: HTH_29 Location: 24 876-2504 7 bp Feature: gene Location: 25365-25550 bp Feature: gene Location: 25640-26056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25652-26054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25652-26054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), RVT-GII

Seq: VMMV01000080.1 Streptococcus sp. 3613 3613_S4_L001_R1_001_(paired)_contig_80, whole genome shotgun sequence (65361 bp)
Overview 1 RT 1: 62142-65119 bp Neighborhood of RT #1 [62142, 65217] eno RVT-GII DDE_3 Feature: gene Location: 62142-62273 bp Feature: gene Location: 62435-63739 bp Feature: domain Description: eno Location: 62438-63731 bp Feature: domain Description: eno Location: 62438-63731 bp Feature: gene Location: 64513-64887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64717-64882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64717-64882 bp Feature: gene Location: 64891-65217 bp Feature: domain Description: DDE_3 Location: 64897-65119 bp Feature: domain Description: DDE_3 Location: 64897-65 119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eno (TIGR01060), RVT-GII, DDE_3 (pfam13358)