myRT

myRT report for GCA_013282055.1_ASM1328205v1

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Seq: BLSD01000024.1 Candidatus Hakubanella thermoalkaliphilus S47 DNA, HKBW3S47_000000000024, whole genome shotgun sequence (19783 bp)
Overview 1 RT 1: 3-2233 bp Neighborhood of RT #1 [3, 2233] RVT-UNC GIIM DUF4214 DUF4214 Feature: gene Location: 3-551 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15-171 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 5-1 71 bp Feature: domain Description: GIIM Note: maturase Location: 246-465 bp Feature: domain Description: GIIM Note: maturase Location: 246-465 bp Feature: gene Location: 689-1945 bp Feature: domain Description: DUF4214 Location: 1571-1721 bp Feature: domain Description: DUF421 4 Location: 1 571 -1 721 bp Feature: domain Description: DUF4214 Location: 1736-1895 bp Feature: domain Description: DUF421 4 Location: 1 736-1 895 bp Feature: gene Location: 2066-2233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26/RVT-GII/RVT-UG4/RVT-CRISPR(RVT-UNC), GIIM (pfam08388), DUF4214 (pfam13946)

Seq: BLSD01000109.1 Candidatus Hakubanella thermoalkaliphilus S47 DNA, HKBW3S47_000000000109, whole genome shotgun sequence (5581 bp)
Overview 1 RT 1: 1-4072 bp Neighborhood of RT #1 [1, 4110] Csx1_III-U RVT-CRISPR RimP nusA Feature: gene Location: 1-183 bp Feature: gene Location: 342-1844 bp Feature: domain Description: Csx1_III-U Location: 558-1770 bp Feature: domain Description: Csx1_III-U Location: 558-1770 bp Feature: gene Location: 2025-2537 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2259-2493 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 2 59-2 493 bp Feature: gene Location: 2618-3079 bp Feature: domain Description: RimP Location: 2630-3074 bp Feature: domain Description: RimP Location: 2 630-3074 bp Feature: gene Location: 3094-4110 bp Feature: domain Description: nusA Location: 3097-4072 bp Feature: domain Description: nusA Location: 3097-4072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR, RimP (COG0779), nusA (PRK12329)

Seq: BLSD01000167.1 Candidatus Hakubanella thermoalkaliphilus S47 DNA, HKBW3S47_000000000167, whole genome shotgun sequence (2796 bp)
Overview 1 RT 1: 119-2137 bp Neighborhood of RT #1 [119, 2137] RVT-GII GIIM Feature: gene Location: 119-1414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 -1046 bp Feature: domain Description: GIIM Note: maturase Location: 1121-1337 bp Feature: domain Description: GIIM Note: maturase Location: 1121-13 3 7 bp Feature: gene Location: 1506-1907 bp Feature: gene Location: 2009-2137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BLSD01000221.1 Candidatus Hakubanella thermoalkaliphilus S47 DNA, HKBW3S47_000000000221, whole genome shotgun sequence (1826 bp)
Overview 1 RT 1: 3-966 bp Neighborhood of RT #1 [3, 966] RVT-GII Feature: gene Location: 3-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-528 bp Feature: gene Location: 543-788 bp Feature: gene Location: 823-966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BLSD01000271.1 Candidatus Hakubanella thermoalkaliphilus S47 DNA, HKBW3S47_000000000271, whole genome shotgun sequence (1332 bp)
Overview 1 RT 1: 3-1330 bp Neighborhood of RT #1 [3, 1330] RVT-GII Feature: gene Location: 3-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-5 19 bp Feature: gene Location: 1025-1330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BLSD01000389.1 Candidatus Hakubanella thermoalkaliphilus S47 DNA, HKBW3S47_000000000389, whole genome shotgun sequence (831 bp)
Overview 1 RT 1: 3-471 bp Neighborhood of RT #1 [3, 830] RVT-GII Feature: gene Location: 3-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 -471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII