myRT

myRT report for GCA_013282565.1_ASM1328256v1

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Seq: JAAGNV010000142.1 Escherichia coli strain 2/2016 NODE_142_length_2875_cov_4.198326, whole genome shotgun sequence (2875 bp)
Overview 1 RT 1: 143-2644 bp Neighborhood of RT #1 [143, 2644] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 143-1810 bp Feature: domain Description: RVT_N Location: 191-428 bp Feature: domain Description: RVT_N Location: 1 91 -428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-1 1 21 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1406 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72-1 406 bp Feature: domain Description: HNHc Note: nucleases Location: 1616-1775 bp Feature: domain Description: HNHc Note: nucleases Location: 1 61 6-1 775 bp Feature: gene Location: 2090-2272 bp Feature: gene Location: 2384-2644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAGNV010000038.1 Escherichia coli strain 2/2016 NODE_38_length_45757_cov_1.257090, whole genome shotgun sequence (45757 bp)
Overview 1 RT 1: 4880-9526 bp Neighborhood of RT #1 [4880, 9591] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 4880-5053 bp Feature: gene Location: 5446-6522 bp Feature: domain Description: COG3547 Location: 5485-6406 bp Feature: domain Description: COG3547 Location: 5485-6406 bp Feature: gene Location: 7064-8584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7334-8066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7334-8066 bp Feature: domain Description: GIIM Note: maturase Location: 8141-8339 bp Feature: domain Description: GIIM Note: maturase Location: 8141-8339 bp Feature: gene Location: 8528-8953 bp Feature: gene Location: 9166-9591 bp Feature: domain Description: PHA02517 Location: 9187-9526 bp Feature: domain Description: PHA02 517 Location: 9187-952 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JAAGNV010000047.1 Escherichia coli strain 2/2016 NODE_47_length_39950_cov_0.882781, whole genome shotgun sequence (39950 bp)
Overview 1 RT 1: 26382-31747 bp Neighborhood of RT #1 [26382, 31782] RVT-UG7 PRK09692 proA Feature: gene Location: 26382-26522 bp Feature: gene Location: 26632-27372 bp Feature: gene Location: 27369-28997 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 27777-28206 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 27777-28206 bp Feature: gene Location: 28990-30174 bp Feature: domain Description: PRK09692 Location: 28996-30151 bp Feature: domain Description: PRK09692 Location: 28996-3 0151 bp Feature: gene Location: 30529-31782 bp Feature: domain Description: proA Location: 30556-31747 bp Feature: domain Description: proA Location: 3 0556-3 1747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)