myRT

myRT report for GCA_013287275.1_ASM1328727v1

Download annotations/find similar RTs

Seq: JABDED010000001.1 Betaproteobacteria bacterium isolate BWMinHeated_Nextera8_MAG2 3300020912.a:Ga0207076_1001, whole genome shotgun sequence (295510 bp)
Overview 1 RT 1: 90580-96703 bp 2 RT 2: 192258-196777 bp Neighborhood of RT #1 [90580, 96768] SseA PRK11040 RVT_N RVT-GII GIIM HNHc PRK05255 Neighborhood of RT #2 [192258, 196777] YfmG Avd_like RVT-DGRs Dcm Feature: gene Location: 90580-91605 bp Feature: domain Description: SseA Location: 90727-91501 bp Feature: domain Description: SseA Location: 90727-91 501 bp Feature: gene Location: 91819-93171 bp Feature: domain Description: PRK11040 Location: 91849-93166 bp Feature: domain Description: PRK1 1 040 Location: 91 849-931 66 bp Feature: gene Location: 93291-94994 bp Feature: RT Description: RVT_N Location: 93351-93588 bp Feature: RT Description: RVT_N Location: 93351 -93588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93639-94287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93639-94287 bp Feature: domain Description: GIIM Note: maturase Location: 94338-94572 bp Feature: domain Description: GIIM Note: maturase Location: 94338-94572 bp Feature: domain Description: HNHc Note: nucleases Location: 94794-94956 bp Feature: domain Description: HNHc Note: nucleases Location: 94794-94956 bp Feature: gene Location: 95571-95795 bp Feature: gene Location: 96169-96768 bp Feature: domain Description: PRK05255 Location: 96211-96703 bp Feature: domain Description: PRK05255 Location: 9621 1 -96703 bp Feature: gene Location: 192258-193184 bp Feature: domain Description: YfmG Location: 192576-193179 bp Feature: domain Description: YfmG Location: 1 92576-1 931 79 bp Feature: gene Location: 193260-194108 bp Feature: domain Description: Avd_like Location: 193800-194091 bp Feature: domain Description: Avd_like Location: 1 93800-1 94091 bp Feature: gene Location: 194105-195385 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 194576-195224 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 94576-1 95224 bp Feature: gene Location: 195382-196461 bp Feature: domain Description: Dcm Location: 195403-195919 bp Feature: domain Description: Dcm Location: 1 95403-1 9591 9 bp Feature: gene Location: 196484-196777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SseA (COG2897), PRK11040 (peptidase PmbA; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05255 (ribosome-associated protein), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs
Dcm (COG0270)

Seq: JABDED010000024.1 Betaproteobacteria bacterium isolate BWMinHeated_Nextera8_MAG2 3300020912.a:Ga0207076_1036, whole genome shotgun sequence (37389 bp)
Overview 1 RT 1: 24787-30394 bp Neighborhood of RT #1 [24787, 30573] NlpB PRK03170 RVT_N RVT-GII GIIM HNH SmtA Feature: gene Location: 24787-25968 bp Feature: domain Description: NlpB Location: 24817-25963 bp Feature: domain Description: NlpB Location: 2 4817-2 5963 bp Feature: gene Location: 26113-26991 bp Feature: domain Description: PRK03170 Location: 26116-26986 bp Feature: domain Description: PRK03170 Location: 2 6116-2 6986 bp Feature: gene Location: 27107-28807 bp Feature: RT Description: RVT_N Location: 27164-27407 bp Feature: RT Description: RVT_N Location: 2 7164-2 7407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27452-28100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7452 -2 8100 bp Feature: domain Description: GIIM Note: maturase Location: 28151-28385 bp Feature: domain Description: GIIM Note: maturase Location: 2 8151-2 8385 bp Feature: domain Description: HNH Note: nucleases Location: 28637-28772 bp Feature: domain Description: HNH Note: nucleases Location: 2 8637-2 8772 bp Feature: gene Location: 29685-29852 bp Feature: gene Location: 29977-30573 bp Feature: domain Description: SmtA Location: 30055-30394 bp Feature: domain Description: SmtA Location: 30055-30394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpB (COG3317), PRK03170 (dihydrodipicolinate synthase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), SmtA (COG0500)

Seq: JABDED010000078.1 Betaproteobacteria bacterium isolate BWMinHeated_Nextera8_MAG2 3300020912.a:Ga0207076_1225, whole genome shotgun sequence (12252 bp)
Overview 1 RT 1: 92-4568 bp Neighborhood of RT #1 [92, 4568] rimO RVT_N RVT-GII GIIM HNHc Feature: gene Location: 92-586 bp Feature: gene Location: 586-1965 bp Feature: domain Description: rimO Location: 622-1960 bp Feature: domain Description: rimO Location: 622-1960 bp Feature: gene Location: 2077-3777 bp Feature: RT Description: RVT_N Location: 2137-2380 bp Feature: RT Description: RVT_N Location: 213 7-23 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425-3070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425-3 070 bp Feature: domain Description: GIIM Note: maturase Location: 3124-3358 bp Feature: domain Description: GIIM Note: maturase Location: 3 124-3 3 58 bp Feature: domain Description: HNHc Note: nucleases Location: 3580-3739 bp Feature: domain Description: HNHc Note: nucleases Location: 3 580-3 73 9 bp Feature: gene Location: 4004-4141 bp Feature: gene Location: 4344-4568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), rimO (PRK14862)

Seq: JABDED010000097.1 Betaproteobacteria bacterium isolate BWMinHeated_Nextera8_MAG2 3300020912.a:Ga0207076_1328, whole genome shotgun sequence (8027 bp)
Overview 1 RT 1: 2419-6565 bp Neighborhood of RT #1 [2419, 6651] COG3547 HTH_23 RVT-GII GIIM PRK06958 Feature: gene Location: 2419-3444 bp Feature: domain Description: COG3547 Location: 2434-3400 bp Feature: domain Description: COG354 7 Location: 24 34 -34 00 bp Feature: gene Location: 3841-4242 bp Feature: domain Description: HTH_23 Location: 3889-3961 bp Feature: domain Description: HTH_23 Location: 3889-3961 bp Feature: gene Location: 4310-5677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4643-5258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 64 3-5258 bp Feature: domain Description: GIIM Note: maturase Location: 5315-5525 bp Feature: domain Description: GIIM Note: maturase Location: 5315-5525 bp Feature: gene Location: 5858-6109 bp Feature: gene Location: 6142-6651 bp Feature: domain Description: PRK06958 Location: 6169-6565 bp Feature: domain Description: PRK06958 Location: 6169-6565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), HTH_23 (pfam13384), RVT-GII, GIIM (pfam08388), PRK06958 (single-stranded DNA-binding protein; Provisional)