myRT

myRT report for GCA_013294265.1_ASM1329426v1

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Seq: JABSWD010000001.1 Clostridium tetanomorphum strain DJ062 Ga0423206_01, whole genome shotgun sequence (4490777 bp)
Overview 1 RT 1: 528947-540931 bp 2 RT 2: 742188-751097 bp 3 RT 3: 1954438-1959176 bp 4 RT 4: 2079969-2088855 bp 5 RT 5: 3147028-3154380 bp 6 RT 6: 4006877-4013410 bp 7 RT 7: 4039057-4041328 bp 8 RT 8: 4316731-4325103 bp Neighborhood of RT #1 [528947, 540939] addA_Gpos LDH_2 RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM Pat_ExoU_VipD_like PRK05469 Neighborhood of RT #2 [742188, 751097] sulfite_red_B sulfite_red_C RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM HypF Neighborhood of RT #3 [1954438, 1959769] PRK13780 PRK05764 RVT-GII RVT-GII PRK02971 ArnT Neighborhood of RT #4 [2079969, 2088866] DppB PBP2_NikA_DppA_OppA_like_19 RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII HTH_ARAC SASP Neighborhood of RT #5 [3147028, 3154385] spo_ytxC RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII PRK05568 Neighborhood of RT #6 [4006877, 4013410] NPY1 RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM PRK06242 NapF Neighborhood of RT #7 [4039057, 4041328] RVT-GII Neighborhood of RT #8 [4316731, 4325114] SalY RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM LytT HATPase_AgrC-ComD-like Feature: gene Location: 528947-532759 bp Feature: domain Description: addA_Gpos Location: 528995-532754 bp Feature: domain Description: addA_Gpos Location: 528995-532754 bp Feature: gene Location: 532917-533864 bp Feature: domain Description: LDH_2 Location: 532938-533853 bp Feature: domain Description: LDH_2 Location: 532938-533853 bp Feature: gene Location: 534340-534927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534685-534916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534685-53491 6 bp Feature: gene Location: 535411-536469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535666-536350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535666-536350 bp Feature: gene Location: 536557-536700 bp Feature: gene Location: 536833-537627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536836-537241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536836-537241 bp Feature: domain Description: GIIM Note: maturase Location: 537322-537553 bp Feature: domain Description: GIIM Note: maturase Location: 537322-537553 bp Feature: gene Location: 537746-538297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537749-537851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537749-537851 bp Feature: domain Description: GIIM Note: maturase Location: 537905-538136 bp Feature: domain Description: GIIM Note: maturase Location: 537905-5381 36 bp Feature: gene Location: 538565-539482 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 538583-539168 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 538583-5391 68 bp Feature: gene Location: 539713-540939 bp Feature: domain Description: PRK05469 Location: 539719-540931 bp Feature: domain Description: PRK05469 Location: 53971 9-540931 bp Feature: gene Location: 742188-742982 bp Feature: domain Description: sulfite_red_B Location: 742200-742980 bp Feature: domain Description: sulfite_red_B Location: 742200-742980 bp Feature: gene Location: 742995-743945 bp Feature: domain Description: sulfite_red_C Location: 743001-743940 bp Feature: domain Description: sulfite_red_C Location: 743001 -743940 bp Feature: gene Location: 744408-744995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744753-744984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744753-744984 bp Feature: gene Location: 745479-746768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745734-746418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745734-74641 8 bp Feature: gene Location: 746901-747695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746904-747309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746904-747309 bp Feature: domain Description: GIIM Note: maturase Location: 747390-747621 bp Feature: domain Description: GIIM Note: maturase Location: 747390-747621 bp Feature: gene Location: 747814-748365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747817-747919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74781 7-74791 9 bp Feature: domain Description: GIIM Note: maturase Location: 747973-748204 bp Feature: domain Description: GIIM Note: maturase Location: 747973-748204 bp Feature: gene Location: 748595-750868 bp Feature: domain Description: HypF Location: 748613-750836 bp Feature: domain Description: HypF Location: 74861 3-750836 bp Feature: gene Location: 750930-751097 bp Feature: gene Location: 1954438-1954695 bp Feature: domain Description: PRK13780 Location: 1954441-1954684 bp Feature: domain Description: PRK1 3780 Location: 1 954441 -1 954684 bp Feature: gene Location: 1954799-1956025 bp Feature: domain Description: PRK05764 Location: 1954838-1956020 bp Feature: domain Description: PRK05764 Location: 1 954838-1 956020 bp Feature: gene Location: 1956849-1957154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1956852-1957116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 956852-1 9571 1 6 bp Feature: gene Location: 1957171-1957701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957516-1957696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 95751 6-1 957696 bp Feature: gene Location: 1958160-1958516 bp Feature: domain Description: PRK02971 Location: 1958175-1958511 bp Feature: domain Description: PRK02971 Location: 1 9581 75-1 95851 1 bp Feature: gene Location: 1958513-1959769 bp Feature: domain Description: ArnT Location: 1958717-1959176 bp Feature: domain Description: ArnT Location: 1 95871 7-1 9591 76 bp Feature: gene Location: 2079969-2080955 bp Feature: domain Description: DppB Location: 2079999-2080941 bp Feature: domain Description: DppB Location: 2079999-2080941 bp Feature: gene Location: 2080965-2082608 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_19 Location: 2081118-2082534 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_1 9 Location: 2081 1 1 8-2082534 bp Feature: gene Location: 2082991-2083542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2082994-2083096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2082994-2083096 bp Feature: domain Description: GIIM Note: maturase Location: 2083150-2083381 bp Feature: domain Description: GIIM Note: maturase Location: 20831 50-2083381 bp Feature: gene Location: 2083661-2084455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083664-2084069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083664-2084069 bp Feature: domain Description: GIIM Note: maturase Location: 2084150-2084381 bp Feature: domain Description: GIIM Note: maturase Location: 20841 50-2084381 bp Feature: gene Location: 2084588-2085877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2084843-2085527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2084843-2085527 bp Feature: gene Location: 2086361-2086948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086706-2086937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086706-2086937 bp Feature: gene Location: 2087457-2088404 bp Feature: domain Description: HTH_ARAC Location: 2088153-2088399 bp Feature: domain Description: HTH_ARAC Location: 20881 53-2088399 bp Feature: gene Location: 2088660-2088866 bp Feature: domain Description: SASP Location: 2088669-2088855 bp Feature: domain Description: SASP Location: 2088669-2088855 bp Feature: gene Location: 3147028-3147927 bp Feature: domain Description: spo_ytxC Location: 3147043-3147874 bp Feature: domain Description: spo_ytxC Location: 31 47043-31 47874 bp Feature: gene Location: 3148084-3148806 bp Feature: gene Location: 3148902-3149453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3148905-3149007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 48905-31 49007 bp Feature: domain Description: GIIM Note: maturase Location: 3149061-3149292 bp Feature: domain Description: GIIM Note: maturase Location: 31 49061 -31 49292 bp Feature: gene Location: 3149572-3150183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3149581-3149797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 49581 -31 49797 bp Feature: domain Description: GIIM Note: maturase Location: 3149878-3150109 bp Feature: domain Description: GIIM Note: maturase Location: 31 49878-31 501 09 bp Feature: gene Location: 3150499-3151788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3150754-3151438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 50754-31 51 438 bp Feature: gene Location: 3152272-3152859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3152617-3152848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 5261 7-31 52848 bp Feature: gene Location: 3153224-3153523 bp Feature: gene Location: 3153957-3154385 bp Feature: domain Description: PRK05568 Location: 3153960-3154380 bp Feature: domain Description: PRK05568 Location: 31 53960-31 54380 bp Feature: gene Location: 4006877-4007416 bp Feature: domain Description: NPY1 Location: 4006883-4007381 bp Feature: domain Description: NPY1 Location: 4006883-4007381 bp Feature: gene Location: 4007523-4007885 bp Feature: gene Location: 4008624-4008821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4008630-4008810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4008630-400881 0 bp Feature: gene Location: 4009305-4010594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009560-4010244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009560-401 0244 bp Feature: gene Location: 4010727-4011521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4010730-4011135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 0730-401 1 1 35 bp Feature: domain Description: GIIM Note: maturase Location: 4011216-4011447 bp Feature: domain Description: GIIM Note: maturase Location: 401 1 21 6-401 1 447 bp Feature: gene Location: 4011640-4012191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4011643-4011745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 1 643-401 1 745 bp Feature: domain Description: GIIM Note: maturase Location: 4011799-4012030 bp Feature: domain Description: GIIM Note: maturase Location: 401 1 799-401 2030 bp Feature: gene Location: 4012453-4013229 bp Feature: domain Description: PRK06242 Location: 4012465-4012789 bp Feature: domain Description: PRK06242 Location: 401 2465-401 2789 bp Feature: domain Description: NapF Location: 4012960-4013200 bp Feature: domain Description: NapF Location: 401 2960-401 3200 bp Feature: gene Location: 4013252-4013410 bp Feature: gene Location: 4039057-4039545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4039063-4039513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4039063-403951 3 bp Feature: gene Location: 4041200-4041328 bp Feature: gene Location: 4316731-4318701 bp Feature: domain Description: SalY Location: 4316734-4318648 bp Feature: domain Description: SalY Location: 431 6734-431 8648 bp Feature: gene Location: 4318743-4318985 bp Feature: gene Location: 4319196-4319783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4319541-4319772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 9541 -431 9772 bp Feature: gene Location: 4319986-4321275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4320241-4320925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4320241 -4320925 bp Feature: gene Location: 4321408-4322202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321411-4321816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321 41 1 -4321 81 6 bp Feature: domain Description: GIIM Note: maturase Location: 4321897-4322128 bp Feature: domain Description: GIIM Note: maturase Location: 4321 897-43221 28 bp Feature: gene Location: 4322321-4322602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4322324-4322426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4322324-4322426 bp Feature: domain Description: GIIM Note: maturase Location: 4322480-4322597 bp Feature: domain Description: GIIM Note: maturase Location: 4322480-4322597 bp Feature: gene Location: 4323024-4323767 bp Feature: domain Description: LytT Location: 4323048-4323738 bp Feature: domain Description: LytT Location: 4323048-4323738 bp Feature: gene Location: 4323771-4325114 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 4324707-4325103 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 4324707-43251 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT addA_Gpos (TIGR02785), LDH_2 (cd05292), RVT-GII, GIIM (pfam08388), Pat_ExoU_VipD_like (cd07207), PRK05469 (tripeptide aminopeptidase PepT), sulfite_red_B (TIGR02911), sulfite_red_C (TIGR02912), HypF (COG0068), PRK13780 (phosphocarrier protein HPr; Provisional)
PRK05764 (aspartate aminotransferase; Provisional), PRK02971 (4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional), ArnT (COG1807), DppB (COG0601), PBP2_NikA_DppA_OppA_like_19 (cd08518), HTH_ARAC (smart00342), SASP (pfam00269), spo_ytxC (TIGR02834), PRK05568 (flavodoxin; Provisional), NPY1 (COG2816)
PRK06242 (flavodoxin; Provisional), NapF (COG1145), SalY (COG0577), LytT (COG3279), HATPase_AgrC-ComD-like (cd16935)