myRT

myRT report for GCA_013294365.1_ASM1329436v1

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Seq: JABSWL010000001.1 Clostridium beijerinckii strain DJ036 Ga0423219_01, whole genome shotgun sequence (6097018 bp)
Overview 1 RT 1: 287508-293306 bp 2 RT 2: 1467890-1474159 bp 3 RT 3: 1523258-1528073 bp 4 RT 4: 2223302-2228370 bp 5 RT 5: 4527083-4531657 bp Neighborhood of RT #1 [287508, 293317] DUF2922 RVT-GII HNHc sigma70-ECF GH25_Lyc-like COG5263 Neighborhood of RT #2 [1467890, 1474170] MATE_MepA_like DUF2922 RVT-GII HNHc SASP RhaT Neighborhood of RT #3 [1523258, 1528111] AbrB DUF2922 RVT-GII HNHc T_den_put_tspse T_den_put_tspse Neighborhood of RT #4 [2223302, 2228370] RVT-UG7 Neighborhood of RT #5 [4527083, 4531657] PTS_IIA_fru BglG PtsN RVT-GII RVT-GII Feature: gene Location: 287508-287960 bp Feature: gene Location: 288066-288284 bp Feature: domain Description: DUF2922 Location: 288081-288273 bp Feature: domain Description: DUF2922 Location: 288081 -288273 bp Feature: gene Location: 288700-290391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288895-289594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288895-289594 bp Feature: domain Description: HNHc Note: nucleases Location: 290146-290281 bp Feature: domain Description: HNHc Note: nucleases Location: 2901 46-290281 bp Feature: gene Location: 291601-292191 bp Feature: domain Description: sigma70-ECF Location: 291661-292153 bp Feature: domain Description: sigma70-ECF Location: 291 661 -2921 53 bp Feature: gene Location: 292481-293317 bp Feature: domain Description: GH25_Lyc-like Location: 292484-292952 bp Feature: domain Description: GH25_Lyc-like Location: 292484-292952 bp Feature: domain Description: COG5263 Location: 292973-293306 bp Feature: domain Description: COG5263 Location: 292973-293306 bp Feature: gene Location: 1467890-1469254 bp Feature: domain Description: MATE_MepA_like Location: 1467923-1469204 bp Feature: domain Description: MATE_MepA_like Location: 1 467923-1 469204 bp Feature: gene Location: 1469392-1469610 bp Feature: domain Description: DUF2922 Location: 1469407-1469599 bp Feature: domain Description: DUF2922 Location: 1 469407-1 469599 bp Feature: gene Location: 1469977-1471668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470172-1470871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4701 72-1 470871 bp Feature: domain Description: HNHc Note: nucleases Location: 1471426-1471546 bp Feature: domain Description: HNHc Note: nucleases Location: 1 471 426-1 471 546 bp Feature: gene Location: 1472907-1473113 bp Feature: domain Description: SASP Location: 1472934-1473111 bp Feature: domain Description: SASP Location: 1 472934-1 4731 1 1 bp Feature: gene Location: 1473253-1474170 bp Feature: domain Description: RhaT Location: 1473319-1474159 bp Feature: domain Description: RhaT Location: 1 47331 9-1 4741 59 bp Feature: gene Location: 1523258-1523500 bp Feature: domain Description: AbrB Location: 1523261-1523435 bp Feature: domain Description: AbrB Location: 1 523261 -1 523435 bp Feature: gene Location: 1523681-1523899 bp Feature: domain Description: DUF2922 Location: 1523696-1523888 bp Feature: domain Description: DUF2922 Location: 1 523696-1 523888 bp Feature: gene Location: 1524200-1525891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1524395-1525094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 524395-1 525094 bp Feature: domain Description: HNHc Note: nucleases Location: 1525649-1525769 bp Feature: domain Description: HNHc Note: nucleases Location: 1 525649-1 525769 bp Feature: gene Location: 1527071-1527892 bp Feature: domain Description: T_den_put_tspse Location: 1527731-1527863 bp Feature: domain Description: T_den_put_tspse Location: 1 527731 -1 527863 bp Feature: gene Location: 1527911-1528111 bp Feature: domain Description: T_den_put_tspse Location: 1527941-1528073 bp Feature: domain Description: T_den_put_tspse Location: 1 527941 -1 528073 bp Feature: gene Location: 2223302-2223442 bp Feature: gene Location: 2223778-2224500 bp Feature: gene Location: 2224497-2225990 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2224776-2225202 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2224776-2225202 bp Feature: gene Location: 2226657-2227490 bp Feature: gene Location: 2227732-2228370 bp Feature: gene Location: 4527083-4527559 bp Feature: domain Description: PTS_IIA_fru Location: 4527116-4527527 bp Feature: domain Description: PTS_IIA_fru Location: 45271 1 6-4527527 bp Feature: gene Location: 4527571-4529526 bp Feature: domain Description: BglG Location: 4527583-4529062 bp Feature: domain Description: BglG Location: 4527583-4529062 bp Feature: domain Description: PtsN Location: 4529107-4529518 bp Feature: domain Description: PtsN Location: 45291 07-452951 8 bp Feature: gene Location: 4530302-4530577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4530305-4530512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4530305-453051 2 bp Feature: gene Location: 4530675-4530899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4530738-4530897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4530738-4530897 bp Feature: gene Location: 4530911-4531045 bp Feature: gene Location: 4531442-4531657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2922 (pfam11148), RVT-GII, HNHc (smart00507), sigma70-ECF (TIGR02937), GH25_Lyc-like (cd06525), COG5263 (Glucan-binding domain (YG repeat) ), MATE_MepA_like (cd13143), SASP (pfam00269), RhaT (TIGR00776), AbrB (pfam05145)
T_den_put_tspse (TIGR01784), RVT-UG7, PTS_IIA_fru (cl00163), BglG (COG3711), PtsN (COG1762)