myRT

myRT report for GCA_013294375.1_ASM1329437v1

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Seq: JABSWK010000001.1 Clostridium beijerinckii strain DJ035 Ga0423218_01, whole genome shotgun sequence (6403899 bp)
Overview 1 RT 1: 2168046-2173585 bp 2 RT 2: 5983167-5990967 bp Neighborhood of RT #1 [2168046, 2173629] Recombinase Zn_ribbon_recom RVT-GII GIIM WrbA PucR Neighborhood of RT #2 [5983167, 5990972] DUF1848 RVT-UG25 DUF1848 sensory_box PAS_9 sensory_box SpoIIE Feature: gene Location: 2168046-2168735 bp Feature: domain Description: Recombinase Location: 2168187-2168505 bp Feature: domain Description: Recombinase Location: 21 681 87-21 68505 bp Feature: domain Description: Zn_ribbon_recom Location: 2168553-2168667 bp Feature: domain Description: Zn_ribbon_recom Location: 21 68553-21 68667 bp Feature: gene Location: 2168930-2169190 bp Feature: gene Location: 2169585-2171000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2169942-2170560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 69942-21 70560 bp Feature: domain Description: GIIM Note: maturase Location: 2170611-2170839 bp Feature: domain Description: GIIM Note: maturase Location: 21 7061 1 -21 70839 bp Feature: gene Location: 2171453-2172031 bp Feature: domain Description: WrbA Location: 2171471-2171831 bp Feature: domain Description: WrbA Location: 21 71 471 -21 71 831 bp Feature: gene Location: 2172055-2173629 bp Feature: domain Description: PucR Location: 2173162-2173585 bp Feature: domain Description: PucR Location: 21 731 62-21 73585 bp Feature: gene Location: 5983167-5984048 bp Feature: domain Description: DUF1848 Location: 5983224-5984034 bp Feature: domain Description: DUF1 848 Location: 5983224-5984034 bp Feature: gene Location: 5984349-5984711 bp Feature: gene Location: 5984825-5987656 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 5986130-5986541 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 59861 30-5986541 bp Feature: gene Location: 5987841-5988359 bp Feature: domain Description: DUF1848 Location: 5987946-5988330 bp Feature: domain Description: DUF1 848 Location: 5987946-5988330 bp Feature: gene Location: 5989149-5990972 bp Feature: domain Description: sensory_box Location: 5989212-5989581 bp Feature: domain Description: sensory_box Location: 598921 2-5989581 bp Feature: domain Description: PAS_9 Location: 5989614-5989902 bp Feature: domain Description: PAS_9 Location: 598961 4-5989902 bp Feature: domain Description: sensory_box Location: 5989935-5990283 bp Feature: domain Description: sensory_box Location: 5989935-5990283 bp Feature: domain Description: SpoIIE Location: 5990442-5990967 bp Feature: domain Description: SpoIIE Location: 5990442-5990967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), WrbA (COG0655), PucR (pfam07905), DUF1848 (pfam08902), RVT-UG25, sensory_box (TIGR00229), PAS_9 (pfam13426)
SpoIIE (pfam07228)