myRT

myRT report for GCA_013294445.1_ASM1329444v1

Download annotations/find similar RTs

Seq: JABSWN010000001.1 Clostridium saccharoperbutylacetonicum strain DJ069 Ga0423224_01, whole genome shotgun sequence (4560894 bp)
Overview 1 RT 1: 488443-494578 bp 2 RT 2: 2028604-2036249 bp 3 RT 3: 3617201-3622220 bp 4 RT 4: 3897907-3903117 bp Neighborhood of RT #1 [488443, 494604] arb PRK14054 RVT-GII GIIM DUF4179 DUF5643 PRK06811 Neighborhood of RT #2 [2028604, 2036254] PRK13962 PRK05434 RVT-GII GIIM COG2112 eno Neighborhood of RT #3 [3617201, 3622237] HTH_28 HTH_28 HTH_28 RVT_N RVT-GII YkfC McrA PBP1_GGBP Neighborhood of RT #4 [3897907, 3903117] AcrR RVT_N RVT-GII YkfC McrA Feature: gene Location: 488443-489858 bp Feature: domain Description: arb Location: 488455-489850 bp Feature: domain Description: arb Location: 488455-489850 bp Feature: gene Location: 490301-490774 bp Feature: domain Description: PRK14054 Location: 490304-490769 bp Feature: domain Description: PRK1 4054 Location: 490304-490769 bp Feature: gene Location: 490931-492346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491288-491906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 288-491 906 bp Feature: domain Description: GIIM Note: maturase Location: 491957-492185 bp Feature: domain Description: GIIM Note: maturase Location: 491 957-4921 85 bp Feature: gene Location: 492906-494024 bp Feature: domain Description: DUF4179 Location: 493029-493308 bp Feature: domain Description: DUF41 79 Location: 493029-493308 bp Feature: domain Description: DUF5643 Location: 493590-493923 bp Feature: domain Description: DUF5643 Location: 493590-493923 bp Feature: gene Location: 494026-494604 bp Feature: domain Description: PRK06811 Location: 494047-494578 bp Feature: domain Description: PRK0681 1 Location: 494047-494578 bp Feature: gene Location: 2028604-2029407 bp Feature: domain Description: PRK13962 Location: 2028658-2029405 bp Feature: domain Description: PRK1 3962 Location: 2028658-2029405 bp Feature: gene Location: 2029704-2031248 bp Feature: domain Description: PRK05434 Location: 2029713-2031237 bp Feature: domain Description: PRK05434 Location: 202971 3-2031 237 bp Feature: gene Location: 2031763-2033121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032063-2032681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032063-2032681 bp Feature: domain Description: GIIM Note: maturase Location: 2032732-2032960 bp Feature: domain Description: GIIM Note: maturase Location: 2032732-2032960 bp Feature: gene Location: 2033387-2033980 bp Feature: domain Description: COG2112 Location: 2033438-2033873 bp Feature: domain Description: COG21 1 2 Location: 2033438-2033873 bp Feature: gene Location: 2034962-2036254 bp Feature: domain Description: eno Location: 2034980-2036249 bp Feature: domain Description: eno Location: 2034980-2036249 bp Feature: gene Location: 3617201-3617884 bp Feature: domain Description: HTH_28 Location: 3617234-3617381 bp Feature: domain Description: HTH_28 Location: 361 7234-361 7381 bp Feature: domain Description: HTH_28 Location: 3617408-3617525 bp Feature: domain Description: HTH_28 Location: 361 7408-361 7525 bp Feature: domain Description: HTH_28 Location: 3617597-3617753 bp Feature: domain Description: HTH_28 Location: 361 7597-361 7753 bp Feature: gene Location: 3618013-3618162 bp Feature: gene Location: 3618823-3620640 bp Feature: RT Description: RVT_N Location: 3618880-3619120 bp Feature: RT Description: RVT_N Location: 361 8880-361 91 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3619180-3619831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 91 80-361 9831 bp Feature: domain Description: YkfC Location: 3619969-3620128 bp Feature: domain Description: YkfC Location: 361 9969-36201 28 bp Feature: domain Description: McrA Location: 3620299-3620524 bp Feature: domain Description: McrA Location: 3620299-3620524 bp Feature: gene Location: 3620754-3620996 bp Feature: gene Location: 3621185-3622237 bp Feature: domain Description: PBP1_GGBP Location: 3621299-3622220 bp Feature: domain Description: PBP1 _GGBP Location: 3621 299-3622220 bp Feature: gene Location: 3897907-3898587 bp Feature: domain Description: AcrR Location: 3898084-3898417 bp Feature: domain Description: AcrR Location: 3898084-389841 7 bp Feature: gene Location: 3898879-3899412 bp Feature: gene Location: 3900153-3901970 bp Feature: RT Description: RVT_N Location: 3900210-3900450 bp Feature: RT Description: RVT_N Location: 390021 0-3900450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3900510-3901161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390051 0-3901 1 61 bp Feature: domain Description: YkfC Location: 3901299-3901458 bp Feature: domain Description: YkfC Location: 3901 299-3901 458 bp Feature: domain Description: McrA Location: 3901629-3901854 bp Feature: domain Description: McrA Location: 3901 629-3901 854 bp Feature: gene Location: 3902284-3902451 bp Feature: gene Location: 3902659-3903117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arb (PRK09593), PRK14054 (peptide-methionine (S)-S-oxide reductase), RVT-GII, GIIM (pfam08388), DUF4179 (pfam13786), DUF5643 (pfam18705), PRK06811 (RNA polymerase factor sigma-70; Validated), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), COG2112 (Predicted Ser/Thr protein kinase )
eno (TIGR01060), HTH_28 (pfam13518), RVT_N (pfam13655), YkfC (COG3344), McrA (COG4058), PBP1_GGBP (cd01539), AcrR (COG1309)

Seq: JABSWN010000002.1 Clostridium saccharoperbutylacetonicum strain DJ069 Ga0423224_02, whole genome shotgun sequence (1983590 bp)
Overview 1 RT 1: 796221-802572 bp 2 RT 2: 1623195-1629570 bp 3 RT 3: 1758615-1764095 bp Neighborhood of RT #1 [796221, 802604] PRK14453 Uup Uup RVT-GII GIIM pcaJ_scoB_fam Neighborhood of RT #2 [1623195, 1629584] ST7 Amidase_6 RVT-GII GIIM Adenylsuccinate_lyase_2 PTS_HPr_family Neighborhood of RT #3 [1758615, 1764095] rmlC PRK13342 RVT-GII GIIM COG5263 Feature: gene Location: 796221-797255 bp Feature: domain Description: PRK14453 Location: 796227-797250 bp Feature: domain Description: PRK14453 Location: 7962 2 7-7972 50 bp Feature: gene Location: 797418-798896 bp Feature: domain Description: Uup Location: 797421-797661 bp Feature: domain Description: Uup Location: 79742 1-797661 bp Feature: domain Description: Uup Location: 797694-798891 bp Feature: domain Description: Uup Location: 797694-798891 bp Feature: gene Location: 799165-800580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799522-800140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79952 2 -800140 bp Feature: domain Description: GIIM Note: maturase Location: 800191-800419 bp Feature: domain Description: GIIM Note: maturase Location: 800191-800419 bp Feature: gene Location: 801241-801375 bp Feature: gene Location: 801951-802604 bp Feature: domain Description: pcaJ_scoB_fam Location: 801963-802572 bp Feature: domain Description: pcaJ_scoB_fam Location: 801963-802 572 bp Feature: gene Location: 1623195-1624418 bp Feature: domain Description: ST7 Location: 1623675-1624356 bp Feature: domain Description: ST7 Location: 162 3675-162 4356 bp Feature: gene Location: 1624754-1625737 bp Feature: domain Description: Amidase_6 Location: 1625309-1625708 bp Feature: domain Description: Amidase_6 Location: 162 5309-162 5708 bp Feature: gene Location: 1625843-1627258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1626200-1626818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 62 00-162 6818 bp Feature: domain Description: GIIM Note: maturase Location: 1626869-1627097 bp Feature: domain Description: GIIM Note: maturase Location: 162 6869-162 7097 bp Feature: gene Location: 1627737-1629167 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 1627764-1629069 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 162 7764-162 9069 bp Feature: gene Location: 1629315-1629584 bp Feature: domain Description: PTS_HPr_family Location: 1629327-1629570 bp Feature: domain Description: PTS_HPr_family Location: 162 932 7-162 9570 bp Feature: gene Location: 1758615-1759205 bp Feature: domain Description: rmlC Location: 1758630-1759158 bp Feature: domain Description: rmlC Location: 1758630-1759158 bp Feature: gene Location: 1759280-1759561 bp Feature: domain Description: PRK13342 Location: 1759289-1759544 bp Feature: domain Description: PRK13342 Location: 17592 89-1759544 bp Feature: gene Location: 1759781-1761196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1760138-1760756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1760138-1760756 bp Feature: domain Description: GIIM Note: maturase Location: 1760807-1761035 bp Feature: domain Description: GIIM Note: maturase Location: 1760807-1761035 bp Feature: gene Location: 1761774-1762688 bp Feature: domain Description: COG5263 Location: 1761861-1762149 bp Feature: domain Description: COG52 63 Location: 1761861-1762 149 bp Feature: gene Location: 1762803-1764095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional), Uup (COG0488), RVT-GII, GIIM (pfam08388), pcaJ_scoB_fam (TIGR02428), ST7 (pfam04184), Amidase_6 (pfam12671), Adenylsuccinate_lyase_2 (cd03302), PTS_HPr_family (TIGR01003), rmlC (TIGR01221)
PRK13342 (recombination factor protein RarA; Reviewed), COG5263 (Glucan-binding domain (YG repeat) )