myRT

myRT report for GCA_013294615.1_ASM1329461v1

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Seq: JABSWW010000001.1 Clostridium beijerinckii strain DJ080 Ga0423246_01, whole genome shotgun sequence (6451901 bp)
Overview 1 RT 1: 946547-952146 bp 2 RT 2: 1257194-1263990 bp 3 RT 3: 6357311-6362988 bp Neighborhood of RT #1 [946547, 952175] HTH_1 PBP2_LTTR_substrate DUF2922 RVT-GII HNHc YvrJ sigma70-ECF Neighborhood of RT #2 [1257194, 1264064] DUF2922 RVT-GII HNHc PRK15347 BaeS Neighborhood of RT #3 [6357311, 6363362] DUF2922 RVT-GII HNHc PRK06811 DUF4179 DUF4179 Feature: gene Location: 946547-947494 bp Feature: domain Description: HTH_1 Location: 946565-946733 bp Feature: domain Description: HTH_1 Location: 946565-946733 bp Feature: domain Description: PBP2_LTTR_substrate Location: 946826-947468 bp Feature: domain Description: PBP2_LTTR_substrate Location: 946826-947468 bp Feature: gene Location: 947627-947848 bp Feature: domain Description: DUF2922 Location: 947642-947834 bp Feature: domain Description: DUF2922 Location: 947642-947834 bp Feature: gene Location: 948203-949894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948398-949097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948398-949097 bp Feature: domain Description: HNHc Note: nucleases Location: 949649-949784 bp Feature: domain Description: HNHc Note: nucleases Location: 949649-949784 bp Feature: gene Location: 951392-951595 bp Feature: domain Description: YvrJ Location: 951419-951521 bp Feature: domain Description: YvrJ Location: 951 41 9-951 521 bp Feature: gene Location: 951585-952175 bp Feature: domain Description: sigma70-ECF Location: 951648-952146 bp Feature: domain Description: sigma70-ECF Location: 951 648-9521 46 bp Feature: gene Location: 1257194-1257466 bp Feature: gene Location: 1257717-1257935 bp Feature: domain Description: DUF2922 Location: 1257732-1257924 bp Feature: domain Description: DUF2922 Location: 1 257732-1 257924 bp Feature: gene Location: 1258445-1260136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258640-1259339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 258640-1 259339 bp Feature: domain Description: HNHc Note: nucleases Location: 1259891-1260026 bp Feature: domain Description: HNHc Note: nucleases Location: 1 259891 -1 260026 bp Feature: gene Location: 1261165-1261371 bp Feature: gene Location: 1261665-1264064 bp Feature: domain Description: PRK15347 Location: 1262010-1262460 bp Feature: domain Description: PRK1 5347 Location: 1 26201 0-1 262460 bp Feature: domain Description: BaeS Location: 1262910-1263990 bp Feature: domain Description: BaeS Location: 1 26291 0-1 263990 bp Feature: gene Location: 6357311-6357637 bp Feature: gene Location: 6357974-6358192 bp Feature: domain Description: DUF2922 Location: 6357989-6358181 bp Feature: domain Description: DUF2922 Location: 6357989-63581 81 bp Feature: gene Location: 6358579-6360270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6358774-6359473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6358774-6359473 bp Feature: domain Description: HNHc Note: nucleases Location: 6360025-6360160 bp Feature: domain Description: HNHc Note: nucleases Location: 6360025-63601 60 bp Feature: gene Location: 6361769-6362245 bp Feature: domain Description: PRK06811 Location: 6361772-6362231 bp Feature: domain Description: PRK0681 1 Location: 6361 772-6362231 bp Feature: gene Location: 6362247-6363362 bp Feature: domain Description: DUF4179 Location: 6362370-6362649 bp Feature: domain Description: DUF41 79 Location: 6362370-6362649 bp Feature: domain Description: DUF4179 Location: 6362883-6362988 bp Feature: domain Description: DUF41 79 Location: 6362883-6362988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_LTTR_substrate (cd05466), DUF2922 (pfam11148), RVT-GII, HNHc (smart00507), YvrJ (pfam12841), sigma70-ECF (TIGR02937), PRK15347 (two component system sensor kinase), BaeS (COG0642), PRK06811 (RNA polymerase factor sigma-70; Validated)
DUF4179 (pfam13786)