myRT

myRT report for GCA_013296385.1_ASM1329638v1

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Seq: JABTAF010000001.1 Clostridium beijerinckii strain DJ317 Ga0423365_01, whole genome shotgun sequence (5878890 bp)
Overview 1 RT 1: 50732-58248 bp 2 RT 2: 1942041-1946431 bp 3 RT 3: 2696073-2701124 bp 4 RT 4: 2731933-2736031 bp 5 RT 5: 3116397-3125850 bp 6 RT 6: 3371178-3382265 bp 7 RT 7: 3428275-3433694 bp 8 RT 8: 3934948-3940441 bp 9 RT 9: 4281729-4290954 bp 10 RT 10: 4293831-4298734 bp 11 RT 11: 4540155-4547459 bp Neighborhood of RT #1 [50732, 58253] BaeS OmpR RVT-GII GIIM HTH_MARR UvrA UvrA Neighborhood of RT #2 [1942041, 1946610] COG4185 RVT-UG2 IscU Neighborhood of RT #3 [2696073, 2701135] MATE_MepA_like DUF2922 RVT-GII HNHc BaeS Neighborhood of RT #4 [2731933, 2736031] Bro-N ANT DUF2922 RVT-GII HNHc Neighborhood of RT #5 [3116397, 3125879] RfaB GT2 Methyltransf_23 RVT-GII Collagen Collagen KOG3544 KOG3544 Collagen Beta4Glucosyltransferase TPR_1 TPR Neighborhood of RT #6 [3371178, 3382909] RVT-UG5 COG0610 Neighborhood of RT #7 [3428275, 3433702] MFS_MdtG_MDR_like TetR_N TetR_C_33 RVT-GII GIIM COG4997 PRK06696 Neighborhood of RT #8 [3934948, 3940545] FieF DUF3850 RVT-GII Acetyltransf_7 spoT_relA Neighborhood of RT #9 [4281729, 4290974] CcmA OmpR RVT-GII sCache_3_2 Tar PTPLP-like GxGYxYP_N GxGYxYP_C Neighborhood of RT #10 [4293831, 4298734] PRK06811 RVT-GII HNHc DUF2922 Neighborhood of RT #11 [4540155, 4547467] PBP1_GGBP RVT-GII PhoE BaeS Feature: gene Location: 50732-51784 bp Feature: domain Description: BaeS Location: 50870-51776 bp Feature: domain Description: BaeS Location: 50870-51 776 bp Feature: gene Location: 51789-52481 bp Feature: domain Description: OmpR Location: 51798-52473 bp Feature: domain Description: OmpR Location: 51 798-52473 bp Feature: gene Location: 53283-54698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53640-54258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53640-54258 bp Feature: domain Description: GIIM Note: maturase Location: 54309-54537 bp Feature: domain Description: GIIM Note: maturase Location: 54309-54537 bp Feature: gene Location: 55565-56002 bp Feature: domain Description: HTH_MARR Location: 55652-55943 bp Feature: domain Description: HTH_MARR Location: 55652-55943 bp Feature: gene Location: 56004-58253 bp Feature: domain Description: UvrA Location: 56010-56370 bp Feature: domain Description: UvrA Location: 5601 0-56370 bp Feature: domain Description: UvrA Location: 56385-58248 bp Feature: domain Description: UvrA Location: 56385-58248 bp Feature: gene Location: 1942041-1942214 bp Feature: gene Location: 1942214-1942780 bp Feature: domain Description: COG4185 Location: 1942217-1942772 bp Feature: domain Description: COG41 85 Location: 1 94221 7-1 942772 bp Feature: gene Location: 1943271-1944584 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1943463-1944285 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 943463-1 944285 bp Feature: gene Location: 1945343-1945594 bp Feature: gene Location: 1945918-1946610 bp Feature: domain Description: IscU Location: 1946011-1946431 bp Feature: domain Description: IscU Location: 1 94601 1 -1 946431 bp Feature: gene Location: 2696073-2697461 bp Feature: domain Description: MATE_MepA_like Location: 2696106-2697387 bp Feature: domain Description: MATE_MepA_like Location: 26961 06-2697387 bp Feature: gene Location: 2697578-2697796 bp Feature: domain Description: DUF2922 Location: 2697593-2697785 bp Feature: domain Description: DUF2922 Location: 2697593-2697785 bp Feature: gene Location: 2698072-2699886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698390-2699089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698390-2699089 bp Feature: domain Description: HNHc Note: nucleases Location: 2699641-2699776 bp Feature: domain Description: HNHc Note: nucleases Location: 2699641 -2699776 bp Feature: gene Location: 2700173-2700301 bp Feature: gene Location: 2700968-2701135 bp Feature: domain Description: BaeS Location: 2700974-2701124 bp Feature: domain Description: BaeS Location: 2700974-2701 1 24 bp Feature: gene Location: 2731933-2732688 bp Feature: domain Description: Bro-N Location: 2731975-2732257 bp Feature: domain Description: Bro-N Location: 2731 975-2732257 bp Feature: domain Description: ANT Location: 2732371-2732680 bp Feature: domain Description: ANT Location: 2732371 -2732680 bp Feature: gene Location: 2732767-2732985 bp Feature: domain Description: DUF2922 Location: 2732782-2732974 bp Feature: domain Description: DUF2922 Location: 2732782-2732974 bp Feature: gene Location: 2733341-2735155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2733659-2734358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2733659-2734358 bp Feature: domain Description: HNHc Note: nucleases Location: 2734910-2735045 bp Feature: domain Description: HNHc Note: nucleases Location: 273491 0-2735045 bp Feature: gene Location: 2735442-2735570 bp Feature: gene Location: 2735849-2736031 bp Feature: gene Location: 3116397-3117455 bp Feature: domain Description: RfaB Location: 3116715-3117447 bp Feature: domain Description: RfaB Location: 31 1 671 5-31 1 7447 bp Feature: gene Location: 3117606-3119018 bp Feature: domain Description: GT2 Location: 3117618-3118284 bp Feature: domain Description: GT2 Location: 31 1 761 8-31 1 8284 bp Feature: domain Description: Methyltransf_23 Location: 3118371-3118854 bp Feature: domain Description: Methyltransf_23 Location: 31 1 8371 -31 1 8854 bp Feature: gene Location: 3119575-3120489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119830-3120454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 9830-31 20454 bp Feature: gene Location: 3121649-3124561 bp Feature: domain Description: Collagen Location: 3122189-3122345 bp Feature: domain Description: Collagen Location: 31 221 89-31 22345 bp Feature: domain Description: Collagen Location: 3122465-3122585 bp Feature: domain Description: Collagen Location: 31 22465-31 22585 bp Feature: domain Description: KOG3544 Location: 3122849-3123239 bp Feature: domain Description: KOG3544 Location: 31 22849-31 23239 bp Feature: domain Description: KOG3544 Location: 3123563-3123971 bp Feature: domain Description: KOG3544 Location: 31 23563-31 23971 bp Feature: domain Description: Collagen Location: 3123995-3124169 bp Feature: domain Description: Collagen Location: 31 23995-31 241 69 bp Feature: gene Location: 3124827-3125879 bp Feature: domain Description: Beta4Glucosyltransferase Location: 3124830-3125475 bp Feature: domain Description: Beta4Glucosyltransferase Location: 31 24830-31 25475 bp Feature: domain Description: TPR_1 Location: 3125592-3125682 bp Feature: domain Description: TPR_1 Location: 31 25592-31 25682 bp Feature: domain Description: TPR Location: 3125739-3125850 bp Feature: domain Description: TPR Location: 31 25739-31 25850 bp Feature: gene Location: 3371178-3373661 bp Feature: gene Location: 3373811-3374743 bp Feature: gene Location: 3374762-3378496 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3375221-3375668 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3375221 -3375668 bp Feature: gene Location: 3379158-3379367 bp Feature: gene Location: 3379823-3382909 bp Feature: domain Description: COG0610 Location: 3379850-3382265 bp Feature: domain Description: COG061 0 Location: 3379850-3382265 bp Feature: gene Location: 3428275-3429468 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 3428308-3429439 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 3428308-3429439 bp Feature: gene Location: 3429894-3430451 bp Feature: domain Description: TetR_N Location: 3429948-3430059 bp Feature: domain Description: TetR_N Location: 3429948-3430059 bp Feature: domain Description: TetR_C_33 Location: 3430143-3430431 bp Feature: domain Description: TetR_C_33 Location: 34301 43-3430431 bp Feature: gene Location: 3430703-3432118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431060-3431678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431 060-3431 678 bp Feature: domain Description: GIIM Note: maturase Location: 3431729-3431957 bp Feature: domain Description: GIIM Note: maturase Location: 3431 729-3431 957 bp Feature: gene Location: 3432701-3433009 bp Feature: domain Description: COG4997 Location: 3432704-3432980 bp Feature: domain Description: COG4997 Location: 3432704-3432980 bp Feature: gene Location: 3433094-3433702 bp Feature: domain Description: PRK06696 Location: 3433145-3433694 bp Feature: domain Description: PRK06696 Location: 34331 45-3433694 bp Feature: gene Location: 3934948-3935838 bp Feature: domain Description: FieF Location: 3934951-3935827 bp Feature: domain Description: FieF Location: 3934951 -3935827 bp Feature: gene Location: 3936503-3937000 bp Feature: domain Description: DUF3850 Location: 3936509-3936734 bp Feature: domain Description: DUF3850 Location: 3936509-3936734 bp Feature: gene Location: 3937858-3938772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3938113-3938737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39381 1 3-3938737 bp Feature: gene Location: 3939444-3939929 bp Feature: domain Description: Acetyltransf_7 Location: 3939609-3939858 bp Feature: domain Description: Acetyltransf_7 Location: 3939609-3939858 bp Feature: gene Location: 3940114-3940545 bp Feature: domain Description: spoT_relA Location: 3940129-3940441 bp Feature: domain Description: spoT_relA Location: 39401 29-3940441 bp Feature: gene Location: 4281729-4282649 bp Feature: domain Description: CcmA Location: 4281732-4282629 bp Feature: domain Description: CcmA Location: 4281 732-4282629 bp Feature: gene Location: 4282796-4283491 bp Feature: domain Description: OmpR Location: 4282823-4283486 bp Feature: domain Description: OmpR Location: 4282823-4283486 bp Feature: gene Location: 4284706-4285620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4284961-4285585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4284961 -4285585 bp Feature: gene Location: 4286214-4288211 bp Feature: domain Description: sCache_3_2 Location: 4286385-4286751 bp Feature: domain Description: sCache_3_2 Location: 4286385-4286751 bp Feature: domain Description: Tar Location: 4286973-4288209 bp Feature: domain Description: Tar Location: 4286973-4288209 bp Feature: gene Location: 4288509-4290974 bp Feature: domain Description: PTPLP-like Location: 4288635-4289409 bp Feature: domain Description: PTPLP-like Location: 4288635-4289409 bp Feature: domain Description: GxGYxYP_N Location: 4289559-4290189 bp Feature: domain Description: GxGYxYP_N Location: 4289559-42901 89 bp Feature: domain Description: GxGYxYP_C Location: 4290246-4290954 bp Feature: domain Description: GxGYxYP_C Location: 4290246-4290954 bp Feature: gene Location: 4293831-4294376 bp Feature: domain Description: PRK06811 Location: 4293834-4294362 bp Feature: domain Description: PRK0681 1 Location: 4293834-4294362 bp Feature: gene Location: 4295274-4295402 bp Feature: gene Location: 4295689-4297503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296007-4296706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296007-4296706 bp Feature: domain Description: HNHc Note: nucleases Location: 4297258-4297393 bp Feature: domain Description: HNHc Note: nucleases Location: 4297258-4297393 bp Feature: gene Location: 4297853-4298071 bp Feature: domain Description: DUF2922 Location: 4297868-4298060 bp Feature: domain Description: DUF2922 Location: 4297868-4298060 bp Feature: gene Location: 4298408-4298734 bp Feature: gene Location: 4540155-4541207 bp Feature: domain Description: PBP1_GGBP Location: 4540269-4541199 bp Feature: domain Description: PBP1 _GGBP Location: 4540269-4541 1 99 bp Feature: gene Location: 4541480-4542055 bp Feature: gene Location: 4543422-4544336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4543677-4544301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4543677-4544301 bp Feature: gene Location: 4544977-4545771 bp Feature: domain Description: PhoE Location: 4545082-4545748 bp Feature: domain Description: PhoE Location: 4545082-4545748 bp Feature: gene Location: 4546202-4547467 bp Feature: domain Description: BaeS Location: 4547027-4547459 bp Feature: domain Description: BaeS Location: 4547027-4547459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388), HTH_MARR (smart00347), UvrA (COG0178), COG4185 (Predicted ABC-type ATPase ), RVT-UG2, IscU (COG0822), MATE_MepA_like (cd13143)
DUF2922 (pfam11148), HNHc (smart00507), Bro-N (smart01040), ANT (pfam03374), RfaB (COG0438), GT2 (COG1216), Methyltransf_23 (pfam13489), Collagen (pfam01391), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), Beta4Glucosyltransferase (cd02511)
TPR_1 (pfam00515), TPR (smart00028), RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), MFS_MdtG_MDR_like (cd17391), TetR_N (pfam00440), TetR_C_33, COG4997 (Predicted house-cleaning noncanonical NTP pyrophosphatase, all-alpha NTP-PPase (MazG) superfamily ), PRK06696 (uridine kinase; Validated), FieF (COG0053)
DUF3850 (pfam12961), Acetyltransf_7 (pfam13508), spoT_relA (TIGR00691), CcmA (COG4133), sCache_3_2 (pfam17203), Tar (COG0840), PTPLP-like (cd14495), GxGYxYP_N (pfam16216), GxGYxYP_C (pfam14323), PRK06811 (RNA polymerase factor sigma-70; Validated)
PBP1_GGBP (cd01539), PhoE (COG0406)