myRT

myRT report for GCA_013296705.1_ASM1329670v1

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Seq: JABTAX010000001.1 Clostridium tetanomorphum strain DJ061 Ga0423386_01, whole genome shotgun sequence (4475070 bp)
Overview 1 RT 1: 11092-17563 bp 2 RT 2: 869645-876949 bp 3 RT 3: 1373834-1382743 bp 4 RT 4: 2620174-2624923 bp 5 RT 5: 2747592-2756379 bp 6 RT 6: 3428641-3440529 bp 7 RT 7: 4130353-4139604 bp 8 RT 8: 4459911-4460367 bp Neighborhood of RT #1 [11092, 17598] PRK06242 NapF RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII NPY1 Neighborhood of RT #2 [869645, 877002] PRK05568 RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM spo_ytxC Neighborhood of RT #3 [1373834, 1382743] sulfite_red_B sulfite_red_C RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM HypF Neighborhood of RT #4 [2620174, 2625516] PRK13780 PRK05764 RVT-GII RVT-GII PRK02971 ArnT Neighborhood of RT #5 [2747592, 2756390] DppB PBP2_NikA_DppA_OppA_like_19 RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII RT_G2_intron HTH_ARAC SASP Neighborhood of RT #6 [3428641, 3440534] PRK05469 Pat_ExoU_VipD_like RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII RT_G2_intron LDH_2 addA_Gpos Neighborhood of RT #7 [4130353, 4139702] HATPase_AgrC-ComD-like LytT RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII RT_G2_intron SalY LolD Neighborhood of RT #8 [4459911, 4460399] RVT-GII Feature: gene Location: 11092-11250 bp Feature: gene Location: 11273-12049 bp Feature: domain Description: PRK06242 Location: 11285-11609 bp Feature: domain Description: PRK06242 Location: 1 1 285-1 1 609 bp Feature: domain Description: NapF Location: 11780-12020 bp Feature: domain Description: NapF Location: 1 1 780-1 2020 bp Feature: gene Location: 12581-12862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12584-12686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2584-1 2686 bp Feature: domain Description: GIIM Note: maturase Location: 12740-12857 bp Feature: domain Description: GIIM Note: maturase Location: 1 2740-1 2857 bp Feature: gene Location: 12981-13772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12984-13386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2984-1 3386 bp Feature: domain Description: GIIM Note: maturase Location: 13467-13698 bp Feature: domain Description: GIIM Note: maturase Location: 1 3467-1 3698 bp Feature: gene Location: 13905-14987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13953-14637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3953-1 4637 bp Feature: gene Location: 15005-15181 bp Feature: gene Location: 15666-15887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15690-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5690-1 5876 bp Feature: gene Location: 16602-16952 bp Feature: gene Location: 17059-17598 bp Feature: domain Description: NPY1 Location: 17065-17563 bp Feature: domain Description: NPY1 Location: 1 7065-1 7563 bp Feature: gene Location: 869645-870073 bp Feature: domain Description: PRK05568 Location: 869648-870068 bp Feature: domain Description: PRK05568 Location: 869648-870068 bp Feature: gene Location: 870543-870806 bp Feature: gene Location: 871171-871758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871516-871747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871 51 6-871 747 bp Feature: gene Location: 872242-873531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872497-873181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872497-8731 81 bp Feature: gene Location: 873823-874458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873826-874072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873826-874072 bp Feature: domain Description: GIIM Note: maturase Location: 874153-874384 bp Feature: domain Description: GIIM Note: maturase Location: 8741 53-874384 bp Feature: gene Location: 874577-875128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874580-874682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874580-874682 bp Feature: domain Description: GIIM Note: maturase Location: 874736-874967 bp Feature: domain Description: GIIM Note: maturase Location: 874736-874967 bp Feature: gene Location: 875224-875946 bp Feature: gene Location: 876103-877002 bp Feature: domain Description: spo_ytxC Location: 876118-876949 bp Feature: domain Description: spo_ytxC Location: 8761 1 8-876949 bp Feature: gene Location: 1373834-1374628 bp Feature: domain Description: sulfite_red_B Location: 1373846-1374626 bp Feature: domain Description: sulfite_red_B Location: 1 373846-1 374626 bp Feature: gene Location: 1374641-1375591 bp Feature: domain Description: sulfite_red_C Location: 1374647-1375586 bp Feature: domain Description: sulfite_red_C Location: 1 374647-1 375586 bp Feature: gene Location: 1376054-1376641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376399-1376630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 376399-1 376630 bp Feature: gene Location: 1377125-1378183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377380-1378064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 377380-1 378064 bp Feature: gene Location: 1378271-1378414 bp Feature: gene Location: 1378547-1379341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1378550-1378955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 378550-1 378955 bp Feature: domain Description: GIIM Note: maturase Location: 1379036-1379267 bp Feature: domain Description: GIIM Note: maturase Location: 1 379036-1 379267 bp Feature: gene Location: 1379460-1380011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379463-1379565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379463-1 379565 bp Feature: domain Description: GIIM Note: maturase Location: 1379619-1379850 bp Feature: domain Description: GIIM Note: maturase Location: 1 37961 9-1 379850 bp Feature: gene Location: 1380241-1382514 bp Feature: domain Description: HypF Location: 1380259-1382482 bp Feature: domain Description: HypF Location: 1 380259-1 382482 bp Feature: gene Location: 1382576-1382743 bp Feature: gene Location: 2620174-2620431 bp Feature: domain Description: PRK13780 Location: 2620177-2620420 bp Feature: domain Description: PRK1 3780 Location: 26201 77-2620420 bp Feature: gene Location: 2620535-2621761 bp Feature: domain Description: PRK05764 Location: 2620574-2621756 bp Feature: domain Description: PRK05764 Location: 2620574-2621 756 bp Feature: gene Location: 2622585-2622890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2622588-2622852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2622588-2622852 bp Feature: gene Location: 2622907-2623437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623252-2623432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623252-2623432 bp Feature: gene Location: 2623907-2624263 bp Feature: domain Description: PRK02971 Location: 2623922-2624258 bp Feature: domain Description: PRK02971 Location: 2623922-2624258 bp Feature: gene Location: 2624260-2625516 bp Feature: domain Description: ArnT Location: 2624464-2624923 bp Feature: domain Description: ArnT Location: 2624464-2624923 bp Feature: gene Location: 2747592-2748578 bp Feature: domain Description: DppB Location: 2747622-2748564 bp Feature: domain Description: DppB Location: 2747622-2748564 bp Feature: gene Location: 2748588-2750231 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_19 Location: 2748741-2750157 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_1 9 Location: 2748741 -27501 57 bp Feature: gene Location: 2750614-2751165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2750617-2750719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275061 7-275071 9 bp Feature: domain Description: GIIM Note: maturase Location: 2750773-2751004 bp Feature: domain Description: GIIM Note: maturase Location: 2750773-2751 004 bp Feature: gene Location: 2751284-2752078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2751287-2751692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2751 287-2751 692 bp Feature: domain Description: GIIM Note: maturase Location: 2751773-2752004 bp Feature: domain Description: GIIM Note: maturase Location: 2751 773-2752004 bp Feature: gene Location: 2752211-2753500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2752466-2753150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2752466-27531 50 bp Feature: gene Location: 2753984-2754472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754329-2754398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754329-2754398 bp Feature: domain Description: RT_G2_intron Location: 2754410-2754461 bp Feature: domain Description: RT_G2_intron Location: 275441 0-2754461 bp Feature: gene Location: 2754981-2755928 bp Feature: domain Description: HTH_ARAC Location: 2755677-2755923 bp Feature: domain Description: HTH_ARAC Location: 2755677-2755923 bp Feature: gene Location: 2756184-2756390 bp Feature: domain Description: SASP Location: 2756193-2756379 bp Feature: domain Description: SASP Location: 27561 93-2756379 bp Feature: gene Location: 3428641-3429867 bp Feature: domain Description: PRK05469 Location: 3428647-3429859 bp Feature: domain Description: PRK05469 Location: 3428647-3429859 bp Feature: gene Location: 3430098-3431015 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 3430116-3430701 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 34301 1 6-3430701 bp Feature: gene Location: 3431283-3431834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431286-3431388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431 286-3431 388 bp Feature: domain Description: GIIM Note: maturase Location: 3431442-3431673 bp Feature: domain Description: GIIM Note: maturase Location: 3431 442-3431 673 bp Feature: gene Location: 3431953-3432747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431956-3432361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431 956-3432361 bp Feature: domain Description: GIIM Note: maturase Location: 3432442-3432673 bp Feature: domain Description: GIIM Note: maturase Location: 3432442-3432673 bp Feature: gene Location: 3432880-3433023 bp Feature: gene Location: 3433111-3434169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433366-3434050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433366-3434050 bp Feature: gene Location: 3434653-3435141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434998-3435067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434998-3435067 bp Feature: domain Description: RT_G2_intron Location: 3435079-3435130 bp Feature: domain Description: RT_G2_intron Location: 3435079-34351 30 bp Feature: gene Location: 3435617-3436564 bp Feature: domain Description: LDH_2 Location: 3435638-3436553 bp Feature: domain Description: LDH_2 Location: 3435638-3436553 bp Feature: gene Location: 3436722-3440534 bp Feature: domain Description: addA_Gpos Location: 3436770-3440529 bp Feature: domain Description: addA_Gpos Location: 3436770-3440529 bp Feature: gene Location: 4130353-4131696 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 4131289-4131685 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 41 31 289-41 31 685 bp Feature: gene Location: 4131700-4132440 bp Feature: domain Description: LytT Location: 4131721-4132411 bp Feature: domain Description: LytT Location: 41 31 721 -41 3241 1 bp Feature: gene Location: 4132595-4133146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4132598-4132700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 32598-41 32700 bp Feature: domain Description: GIIM Note: maturase Location: 4132754-4132985 bp Feature: domain Description: GIIM Note: maturase Location: 41 32754-41 32985 bp Feature: gene Location: 4133265-4134059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4133268-4133673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 33268-41 33673 bp Feature: domain Description: GIIM Note: maturase Location: 4133754-4133985 bp Feature: domain Description: GIIM Note: maturase Location: 41 33754-41 33985 bp Feature: gene Location: 4134192-4135481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134447-4135131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 34447-41 351 31 bp Feature: gene Location: 4135966-4136454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4136311-4136380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3631 1 -41 36380 bp Feature: domain Description: RT_G2_intron Location: 4136392-4136443 bp Feature: domain Description: RT_G2_intron Location: 41 36392-41 36443 bp Feature: gene Location: 4136949-4138919 bp Feature: domain Description: SalY Location: 4136952-4138866 bp Feature: domain Description: SalY Location: 41 36952-41 38866 bp Feature: gene Location: 4138932-4139702 bp Feature: domain Description: LolD Location: 4138944-4139604 bp Feature: domain Description: LolD Location: 41 38944-41 39604 bp Feature: gene Location: 4459911-4460399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4459917-4460367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445991 7-4460367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06242 (flavodoxin; Provisional), NapF (COG1145), RVT-GII, GIIM (pfam08388), NPY1 (COG2816), PRK05568 (flavodoxin; Provisional), spo_ytxC (TIGR02834), sulfite_red_B (TIGR02911), sulfite_red_C (TIGR02912), HypF (COG0068)
PRK13780 (phosphocarrier protein HPr; Provisional), PRK05764 (aspartate aminotransferase; Provisional), PRK02971 (4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional), ArnT (COG1807), DppB (COG0601), PBP2_NikA_DppA_OppA_like_19 (cd08518), RT_G2_intron (cd01651), HTH_ARAC (smart00342), SASP (pfam00269), PRK05469 (tripeptide aminopeptidase PepT)
Pat_ExoU_VipD_like (cd07207), LDH_2 (cd05292), addA_Gpos (TIGR02785), HATPase_AgrC-ComD-like (cd16935), LytT (COG3279), SalY (COG0577), LolD (COG1136)