myRT

myRT report for GCA_013296985.1_ASM1329698v1

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Seq: JABTBK010000001.1 Clostridium saccharobutylicum strain DJ276 Ga0423400_01, whole genome shotgun sequence (2228029 bp)
Overview 1 RT 1: 71348-76242 bp 2 RT 2: 1775425-1778625 bp Neighborhood of RT #1 [71348, 76244] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Neighborhood of RT #2 [1775425, 1778625] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 71348-72616 bp Feature: domain Description: DDE_Tnp_1 Location: 71699-72314 bp Feature: domain Description: DDE_Tnp_1 Location: 71 699-7231 4 bp Feature: gene Location: 72675-73532 bp Feature: domain Description: PHA02517 Location: 72963-73512 bp Feature: domain Description: PHA0251 7 Location: 72963-7351 2 bp Feature: gene Location: 74058-75593 bp Feature: RT Description: RVT_N Location: 74130-74373 bp Feature: RT Description: RVT_N Location: 741 30-74373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74418-75078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7441 8-75078 bp Feature: domain Description: GIIM Note: maturase Location: 75129-75366 bp Feature: domain Description: GIIM Note: maturase Location: 751 29-75366 bp Feature: domain Description: rve_2 Location: 75510-75585 bp Feature: domain Description: rve_2 Location: 7551 0-75585 bp Feature: gene Location: 75667-75933 bp Feature: domain Description: plantaricin Location: 75688-75931 bp Feature: domain Description: plantaricin Location: 75688-75931 bp Feature: gene Location: 75978-76244 bp Feature: domain Description: plantaricin Location: 75999-76242 bp Feature: domain Description: plantaricin Location: 75999-76242 bp Feature: gene Location: 1775425-1775631 bp Feature: domain Description: DDE_Tnp_1 Location: 1775455-1775593 bp Feature: domain Description: DDE_Tnp_1 Location: 1 775455-1 775593 bp Feature: gene Location: 1775723-1776073 bp Feature: gene Location: 1776544-1777182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1776880-1777063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 776880-1 777063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1777066-1777171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 777066-1 7771 71 bp Feature: gene Location: 1777610-1778023 bp Feature: gene Location: 1778491-1778625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539)

Seq: JABTBK010000005.1 Clostridium saccharobutylicum strain DJ276 Ga0423400_05, whole genome shotgun sequence (363454 bp)
Overview 1 RT 1: 39502-47411 bp 2 RT 2: 161728-170446 bp Neighborhood of RT #1 [39502, 47411] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #2 [161728, 170446] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 39502-42069 bp Feature: domain Description: UvrD Location: 40024-41152 bp Feature: domain Description: UvrD Location: 4002 4-41152 bp Feature: domain Description: UvrD Location: 41329-41569 bp Feature: domain Description: UvrD Location: 4132 9-41569 bp Feature: gene Location: 42355-43362 bp Feature: gene Location: 43574-44698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43790-44348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43790-44348 bp Feature: gene Location: 45000-46304 bp Feature: domain Description: Enpp Location: 45018-46254 bp Feature: domain Description: Enpp Location: 45018-462 54 bp Feature: gene Location: 46875-47411 bp Feature: gene Location: 161728-162255 bp Feature: domain Description: Sig70_famx3 Location: 161734-162217 bp Feature: domain Description: Sig70_famx3 Location: 161734-162 2 17 bp Feature: gene Location: 162474-163499 bp Feature: domain Description: DUF1835 Location: 162489-162858 bp Feature: domain Description: DUF1835 Location: 162 489-162 858 bp Feature: domain Description: DUF3658 Location: 162948-163260 bp Feature: domain Description: DUF3658 Location: 162 948-1632 60 bp Feature: gene Location: 164087-165592 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164723-165365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16472 3-165365 bp Feature: gene Location: 165589-167397 bp Feature: gene Location: 167399-170446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018), Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)