myRT

myRT report for GCA_013297045.1_ASM1329704v1

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Seq: JABTDW010000001.1 Clostridium beijerinckii strain DJ123 Ga0423203_01, whole genome shotgun sequence (6503871 bp)
Overview 1 RT 1: 624504-632348 bp 2 RT 2: 1600849-1616581 bp 3 RT 3: 2217920-2224763 bp 4 RT 4: 3863802-3868232 bp 5 RT 5: 4699150-4705748 bp 6 RT 6: 5902006-5906100 bp 7 RT 7: 6085941-6096464 bp Neighborhood of RT #1 [624504, 632371] TrmA RVT-GII ECF_T_CbiQ cbiO Neighborhood of RT #2 [1600849, 1617195] PRK09183 HTH_3 COG4584 COG4584 RVT-GII GIIM GrsT PRK12467 PRK12467 mcbC-like_oxidoreductase PRK12467 Neighborhood of RT #3 [2217920, 2225140] DUF2922 COG3666 COG3666 RVT-GII HNHc PRK06811 DUF4179 DUF4179 Neighborhood of RT #4 [3863802, 3868348] MurNAc-LAA COG5263 RVT-GII HNHc Amidase_3 sigma70-ECF Neighborhood of RT #5 [4699150, 4705748] RVT-GII HNHc HTH_3 COG4584 COG4584 PRK09183 RVT-GII Neighborhood of RT #6 [5902006, 5907554] MarR RVT-GII GIIM COG1373 Neighborhood of RT #7 [6085941, 6096580] YdeN RVT-GII HNHc PRK09183 HTH_3 COG4584 COG4584 RVT-GII HNHc Amidase_3 sigma70-ECF Feature: gene Location: 624504-624644 bp Feature: gene Location: 625399-626805 bp Feature: domain Description: TrmA Location: 625450-626776 bp Feature: domain Description: TrmA Location: 625450-626776 bp Feature: gene Location: 627986-629872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628304-629009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628304-629009 bp Feature: gene Location: 630689-631531 bp Feature: domain Description: ECF_T_CbiQ Location: 630818-631415 bp Feature: domain Description: ECF_T_CbiQ Location: 63081 8-631 41 5 bp Feature: gene Location: 631544-632371 bp Feature: domain Description: cbiO Location: 631559-632348 bp Feature: domain Description: cbiO Location: 631 559-632348 bp Feature: gene Location: 1600849-1601601 bp Feature: domain Description: PRK09183 Location: 1600852-1601587 bp Feature: domain Description: PRK091 83 Location: 1 600852-1 601 587 bp Feature: gene Location: 1601594-1602889 bp Feature: domain Description: HTH_3 Location: 1601690-1601789 bp Feature: domain Description: HTH_3 Location: 1 601 690-1 601 789 bp Feature: domain Description: COG4584 Location: 1601798-1601969 bp Feature: domain Description: COG4584 Location: 1 601 798-1 601 969 bp Feature: domain Description: COG4584 Location: 1602011-1602401 bp Feature: domain Description: COG4584 Location: 1 60201 1 -1 602401 bp Feature: gene Location: 1603058-1604473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603403-1604021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603403-1 604021 bp Feature: domain Description: GIIM Note: maturase Location: 1604072-1604306 bp Feature: domain Description: GIIM Note: maturase Location: 1 604072-1 604306 bp Feature: gene Location: 1604944-1605651 bp Feature: domain Description: GrsT Location: 1604953-1605631 bp Feature: domain Description: GrsT Location: 1 604953-1 605631 bp Feature: gene Location: 1606234-1617195 bp Feature: domain Description: PRK12467 Location: 1606243-1612003 bp Feature: domain Description: PRK1 2467 Location: 1 606243-1 61 2003 bp Feature: domain Description: PRK12467 Location: 1612006-1614511 bp Feature: domain Description: PRK1 2467 Location: 1 61 2006-1 61 451 1 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 1614970-1615492 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 1 61 4970-1 61 5492 bp Feature: domain Description: PRK12467 Location: 1615576-1616581 bp Feature: domain Description: PRK1 2467 Location: 1 61 5576-1 61 6581 bp Feature: gene Location: 2217920-2218138 bp Feature: domain Description: DUF2922 Location: 2217935-2218127 bp Feature: domain Description: DUF2922 Location: 221 7935-221 81 27 bp Feature: gene Location: 2218333-2219943 bp Feature: domain Description: COG3666 Location: 2218378-2218846 bp Feature: domain Description: COG3666 Location: 221 8378-221 8846 bp Feature: domain Description: COG3666 Location: 2219404-2219911 bp Feature: domain Description: COG3666 Location: 221 9404-221 991 1 bp Feature: gene Location: 2220351-2222207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2220711-2221410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222071 1 -2221 41 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2221962-2222097 bp Feature: domain Description: HNHc Note: nucleases Location: 2221 962-2222097 bp Feature: gene Location: 2223475-2224020 bp Feature: domain Description: PRK06811 Location: 2223478-2224006 bp Feature: domain Description: PRK0681 1 Location: 2223478-2224006 bp Feature: gene Location: 2224022-2225140 bp Feature: domain Description: DUF4179 Location: 2224145-2224424 bp Feature: domain Description: DUF41 79 Location: 22241 45-2224424 bp Feature: domain Description: DUF4179 Location: 2224670-2224763 bp Feature: domain Description: DUF41 79 Location: 2224670-2224763 bp Feature: gene Location: 3863802-3863945 bp Feature: gene Location: 3864008-3864661 bp Feature: domain Description: MurNAc-LAA Location: 3864020-3864233 bp Feature: domain Description: MurNAc-LAA Location: 3864020-3864233 bp Feature: domain Description: COG5263 Location: 3864305-3864656 bp Feature: domain Description: COG5263 Location: 3864305-3864656 bp Feature: gene Location: 3864815-3866635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865133-3865838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38651 33-3865838 bp Feature: domain Description: HNHc Note: nucleases Location: 3866393-3866525 bp Feature: domain Description: HNHc Note: nucleases Location: 3866393-3866525 bp Feature: gene Location: 3867353-3867565 bp Feature: domain Description: Amidase_3 Location: 3867371-3867533 bp Feature: domain Description: Amidase_3 Location: 3867371 -3867533 bp Feature: gene Location: 3867761-3868348 bp Feature: domain Description: sigma70-ECF Location: 3867821-3868232 bp Feature: domain Description: sigma70-ECF Location: 3867821 -3868232 bp Feature: gene Location: 4699150-4699473 bp Feature: gene Location: 4699479-4700231 bp Feature: gene Location: 4700355-4701809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4700382-4701012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4700382-4701 01 2 bp Feature: domain Description: HNHc Note: nucleases Location: 4701567-4701699 bp Feature: domain Description: HNHc Note: nucleases Location: 4701 567-4701 699 bp Feature: gene Location: 4701871-4703166 bp Feature: domain Description: HTH_3 Location: 4701967-4702066 bp Feature: domain Description: HTH_3 Location: 4701 967-4702066 bp Feature: domain Description: COG4584 Location: 4702075-4702246 bp Feature: domain Description: COG4584 Location: 4702075-4702246 bp Feature: domain Description: COG4584 Location: 4702288-4702678 bp Feature: domain Description: COG4584 Location: 4702288-4702678 bp Feature: gene Location: 4703159-4703911 bp Feature: domain Description: PRK09183 Location: 4703162-4703897 bp Feature: domain Description: PRK091 83 Location: 47031 62-4703897 bp Feature: gene Location: 4703932-4704372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4704250-4704340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4704250-4704340 bp Feature: gene Location: 4705175-4705579 bp Feature: gene Location: 4705593-4705748 bp Feature: gene Location: 5902006-5902524 bp Feature: domain Description: MarR Location: 5902102-5902444 bp Feature: domain Description: MarR Location: 59021 02-5902444 bp Feature: gene Location: 5903053-5903358 bp Feature: gene Location: 5903554-5904867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5903812-5904505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590381 2-5904505 bp Feature: domain Description: GIIM Note: maturase Location: 5904592-5904778 bp Feature: domain Description: GIIM Note: maturase Location: 5904592-5904778 bp Feature: gene Location: 5905369-5905863 bp Feature: gene Location: 5905860-5907554 bp Feature: domain Description: COG1373 Location: 5905917-5906100 bp Feature: domain Description: COG1 373 Location: 590591 7-59061 00 bp Feature: gene Location: 6085941-6086510 bp Feature: domain Description: YdeN Location: 6085950-6086505 bp Feature: domain Description: YdeN Location: 6085950-6086505 bp Feature: gene Location: 6086805-6086960 bp Feature: gene Location: 6087514-6089334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6087832-6088537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6087832-6088537 bp Feature: domain Description: HNHc Note: nucleases Location: 6089092-6089224 bp Feature: domain Description: HNHc Note: nucleases Location: 6089092-6089224 bp Feature: gene Location: 6090266-6091018 bp Feature: domain Description: PRK09183 Location: 6090269-6091004 bp Feature: domain Description: PRK091 83 Location: 6090269-6091 004 bp Feature: gene Location: 6091011-6092306 bp Feature: domain Description: HTH_3 Location: 6091107-6091206 bp Feature: domain Description: HTH_3 Location: 6091 1 07-6091 206 bp Feature: domain Description: COG4584 Location: 6091215-6091386 bp Feature: domain Description: COG4584 Location: 6091 21 5-6091 386 bp Feature: domain Description: COG4584 Location: 6091428-6091818 bp Feature: domain Description: COG4584 Location: 6091 428-6091 81 8 bp Feature: gene Location: 6092931-6094751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6093249-6093954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6093249-6093954 bp Feature: domain Description: HNHc Note: nucleases Location: 6094509-6094641 bp Feature: domain Description: HNHc Note: nucleases Location: 6094509-6094641 bp Feature: gene Location: 6095469-6095681 bp Feature: domain Description: Amidase_3 Location: 6095487-6095658 bp Feature: domain Description: Amidase_3 Location: 6095487-6095658 bp Feature: gene Location: 6095993-6096580 bp Feature: domain Description: sigma70-ECF Location: 6096053-6096464 bp Feature: domain Description: sigma70-ECF Location: 6096053-6096464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrmA (COG2265), RVT-GII, ECF_T_CbiQ (TIGR02454), cbiO (TIGR01166), PRK09183 (transposase/IS protein; Provisional), HTH_3 (pfam01381), COG4584 (Transposase ), GIIM (pfam08388), GrsT (COG3208), PRK12467 (peptide synthase; Provisional)
mcbC-like_oxidoreductase, DUF2922 (pfam11148), COG3666 (Transposase ), HNHc (smart00507), PRK06811 (RNA polymerase factor sigma-70; Validated), DUF4179 (pfam13786), MurNAc-LAA (cl02713), COG5263 (Glucan-binding domain (YG repeat) ), Amidase_3 (pfam01520), sigma70-ECF (TIGR02937)
MarR (pfam01047), COG1373 (Predicted ATPase, AAA+ superfamily ), YdeN (COG3545)