myRT

myRT report for GCA_013297125.1_ASM1329712v1

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Seq: JABTEA010000001.1 Clostridium saccharoperbutylacetonicum strain DJ098 Ga0423221_01, whole genome shotgun sequence (6550301 bp)
Overview 1 RT 1: 1050-6197 bp 2 RT 2: 826823-833198 bp 3 RT 3: 962242-967722 bp 4 RT 4: 1664458-1670593 bp 5 RT 5: 3204638-3212283 bp 6 RT 6: 4793233-4798252 bp 7 RT 7: 5073938-5079148 bp 8 RT 8: 6532210-6538561 bp Neighborhood of RT #1 [1050, 6229] Uup ABCF_EF-3 RVT-GII GIIM RVT-GII pcaJ_scoB_fam Neighborhood of RT #2 [826823, 833212] ST7 Amidase_6 RVT-GII GIIM Adenylsuccinate_lyase_2 PTS_HPr_family Neighborhood of RT #3 [962242, 967722] rmlC PRK13342 RVT-GII GIIM COG5263 Neighborhood of RT #4 [1664458, 1670619] arb PRK14054 RVT-GII GIIM DUF4179 DUF5643 PRK06811 Neighborhood of RT #5 [3204638, 3212288] PRK13962 PRK05434 RVT-GII GIIM COG2112 eno Neighborhood of RT #6 [4793233, 4798269] HTH_28 HTH_28 HTH_28 RVT_N RVT-GII YkfC McrA PBP1_GGBP Neighborhood of RT #7 [5073938, 5079148] AcrR RVT_N RVT-GII YkfC McrA Neighborhood of RT #8 [6532210, 6538593] PRK14453 Uup Uup RVT-GII GIIM pcaJ_scoB_fam Feature: gene Location: 1050-1730 bp Feature: domain Description: Uup Location: 1059-1725 bp Feature: domain Description: Uup Location: 1 059-1 725 bp Feature: gene Location: 2382-2525 bp Feature: domain Description: ABCF_EF-3 Location: 2394-2514 bp Feature: domain Description: ABCF_EF-3 Location: 2394-251 4 bp Feature: gene Location: 2793-3446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2796-3006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2796-3006 bp Feature: domain Description: GIIM Note: maturase Location: 3057-3285 bp Feature: domain Description: GIIM Note: maturase Location: 3057-3285 bp Feature: gene Location: 3503-4207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860-4199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860-41 99 bp Feature: gene Location: 4868-5002 bp Feature: gene Location: 5576-6229 bp Feature: domain Description: pcaJ_scoB_fam Location: 5588-6197 bp Feature: domain Description: pcaJ_scoB_fam Location: 5588-61 97 bp Feature: gene Location: 826823-828046 bp Feature: domain Description: ST7 Location: 827303-827984 bp Feature: domain Description: ST7 Location: 827303-827984 bp Feature: gene Location: 828382-829365 bp Feature: domain Description: Amidase_6 Location: 828937-829336 bp Feature: domain Description: Amidase_6 Location: 828937-829336 bp Feature: gene Location: 829471-830886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829828-830446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829828-830446 bp Feature: domain Description: GIIM Note: maturase Location: 830497-830725 bp Feature: domain Description: GIIM Note: maturase Location: 830497-830725 bp Feature: gene Location: 831365-832795 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 831392-832697 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 831 392-832697 bp Feature: gene Location: 832943-833212 bp Feature: domain Description: PTS_HPr_family Location: 832955-833198 bp Feature: domain Description: PTS_HPr_family Location: 832955-8331 98 bp Feature: gene Location: 962242-962832 bp Feature: domain Description: rmlC Location: 962257-962785 bp Feature: domain Description: rmlC Location: 962257-962785 bp Feature: gene Location: 962907-963188 bp Feature: domain Description: PRK13342 Location: 962916-963171 bp Feature: domain Description: PRK1 3342 Location: 96291 6-9631 71 bp Feature: gene Location: 963408-964823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963765-964383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963765-964383 bp Feature: domain Description: GIIM Note: maturase Location: 964434-964662 bp Feature: domain Description: GIIM Note: maturase Location: 964434-964662 bp Feature: gene Location: 965401-966315 bp Feature: domain Description: COG5263 Location: 965488-965776 bp Feature: domain Description: COG5263 Location: 965488-965776 bp Feature: gene Location: 966430-967722 bp Feature: gene Location: 1664458-1665873 bp Feature: domain Description: arb Location: 1664470-1665865 bp Feature: domain Description: arb Location: 1 664470-1 665865 bp Feature: gene Location: 1666316-1666789 bp Feature: domain Description: PRK14054 Location: 1666319-1666784 bp Feature: domain Description: PRK1 4054 Location: 1 66631 9-1 666784 bp Feature: gene Location: 1666946-1668361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1667303-1667921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 667303-1 667921 bp Feature: domain Description: GIIM Note: maturase Location: 1667972-1668200 bp Feature: domain Description: GIIM Note: maturase Location: 1 667972-1 668200 bp Feature: gene Location: 1668921-1670039 bp Feature: domain Description: DUF4179 Location: 1669044-1669323 bp Feature: domain Description: DUF41 79 Location: 1 669044-1 669323 bp Feature: domain Description: DUF5643 Location: 1669605-1669938 bp Feature: domain Description: DUF5643 Location: 1 669605-1 669938 bp Feature: gene Location: 1670041-1670619 bp Feature: domain Description: PRK06811 Location: 1670062-1670593 bp Feature: domain Description: PRK0681 1 Location: 1 670062-1 670593 bp Feature: gene Location: 3204638-3205441 bp Feature: domain Description: PRK13962 Location: 3204692-3205439 bp Feature: domain Description: PRK1 3962 Location: 3204692-3205439 bp Feature: gene Location: 3205738-3207282 bp Feature: domain Description: PRK05434 Location: 3205747-3207271 bp Feature: domain Description: PRK05434 Location: 3205747-3207271 bp Feature: gene Location: 3207797-3209155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3208097-3208715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3208097-320871 5 bp Feature: domain Description: GIIM Note: maturase Location: 3208766-3208994 bp Feature: domain Description: GIIM Note: maturase Location: 3208766-3208994 bp Feature: gene Location: 3209421-3210014 bp Feature: domain Description: COG2112 Location: 3209472-3209907 bp Feature: domain Description: COG21 1 2 Location: 3209472-3209907 bp Feature: gene Location: 3210996-3212288 bp Feature: domain Description: eno Location: 3211014-3212283 bp Feature: domain Description: eno Location: 321 1 01 4-321 2283 bp Feature: gene Location: 4793233-4793916 bp Feature: domain Description: HTH_28 Location: 4793266-4793413 bp Feature: domain Description: HTH_28 Location: 4793266-479341 3 bp Feature: domain Description: HTH_28 Location: 4793440-4793557 bp Feature: domain Description: HTH_28 Location: 4793440-4793557 bp Feature: domain Description: HTH_28 Location: 4793629-4793785 bp Feature: domain Description: HTH_28 Location: 4793629-4793785 bp Feature: gene Location: 4794045-4794194 bp Feature: gene Location: 4794855-4796672 bp Feature: domain Description: RVT_N Location: 4794912-4795152 bp Feature: domain Description: RVT_N Location: 479491 2-47951 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4795212-4795863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479521 2-4795863 bp Feature: domain Description: YkfC Location: 4796001-4796160 bp Feature: domain Description: YkfC Location: 4796001 -47961 60 bp Feature: domain Description: McrA Location: 4796331-4796556 bp Feature: domain Description: McrA Location: 4796331 -4796556 bp Feature: gene Location: 4796786-4797028 bp Feature: gene Location: 4797217-4798269 bp Feature: domain Description: PBP1_GGBP Location: 4797331-4798252 bp Feature: domain Description: PBP1 _GGBP Location: 4797331 -4798252 bp Feature: gene Location: 5073938-5074618 bp Feature: domain Description: AcrR Location: 5074115-5074448 bp Feature: domain Description: AcrR Location: 50741 1 5-5074448 bp Feature: gene Location: 5074910-5075443 bp Feature: gene Location: 5076184-5078001 bp Feature: domain Description: RVT_N Location: 5076241-5076481 bp Feature: domain Description: RVT_N Location: 5076241 -5076481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5076541-5077192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5076541 -50771 92 bp Feature: domain Description: YkfC Location: 5077330-5077489 bp Feature: domain Description: YkfC Location: 5077330-5077489 bp Feature: domain Description: McrA Location: 5077660-5077885 bp Feature: domain Description: McrA Location: 5077660-5077885 bp Feature: gene Location: 5078315-5078482 bp Feature: gene Location: 5078690-5079148 bp Feature: gene Location: 6532210-6533244 bp Feature: domain Description: PRK14453 Location: 6532216-6533239 bp Feature: domain Description: PRK1 4453 Location: 653221 6-6533239 bp Feature: gene Location: 6533407-6534885 bp Feature: domain Description: Uup Location: 6533410-6533650 bp Feature: domain Description: Uup Location: 653341 0-6533650 bp Feature: domain Description: Uup Location: 6533683-6534880 bp Feature: domain Description: Uup Location: 6533683-6534880 bp Feature: gene Location: 6535154-6536569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6535511-6536129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653551 1 -65361 29 bp Feature: domain Description: GIIM Note: maturase Location: 6536180-6536408 bp Feature: domain Description: GIIM Note: maturase Location: 65361 80-6536408 bp Feature: gene Location: 6537230-6537364 bp Feature: gene Location: 6537940-6538593 bp Feature: domain Description: pcaJ_scoB_fam Location: 6537952-6538561 bp Feature: domain Description: pcaJ_scoB_fam Location: 6537952-6538561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABCF_EF-3 (cd03221), RVT-GII, GIIM (pfam08388), pcaJ_scoB_fam (TIGR02428), ST7 (pfam04184), Amidase_6 (pfam12671), Adenylsuccinate_lyase_2 (cd03302), PTS_HPr_family (TIGR01003), rmlC (TIGR01221)
PRK13342 (recombination factor protein RarA; Reviewed), COG5263 (Glucan-binding domain (YG repeat) ), arb (PRK09593), PRK14054 (peptide-methionine (S)-S-oxide reductase), DUF4179 (pfam13786), DUF5643 (pfam18705), PRK06811 (RNA polymerase factor sigma-70; Validated), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), COG2112 (Predicted Ser/Thr protein kinase )
eno (TIGR01060), HTH_28 (pfam13518), RVT_N (pfam13655), YkfC (COG3344), McrA (COG4058), PBP1_GGBP (cd01539), AcrR (COG1309), PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional)