myRT

myRT report for GCA_013297165.1_ASM1329716v1

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Seq: JABTEB010000001.1 Clostridium saccharoperbutylacetonicum strain DJ048 Ga0423222_01, whole genome shotgun sequence (6532239 bp)
Overview 1 RT 1: 769425-777070 bp 2 RT 2: 2357997-2363016 bp 3 RT 3: 2638691-2643901 bp 4 RT 4: 4096905-4103255 bp 5 RT 5: 4923869-4930244 bp 6 RT 6: 5059284-5064764 bp 7 RT 7: 5761511-5767646 bp Neighborhood of RT #1 [769425, 777075] PRK13962 PRK05434 RVT-GII GIIM COG2112 eno Neighborhood of RT #2 [2357997, 2363033] HTH_28 HTH_28 HTH_28 RVT_N RVT-GII YkfC McrA PBP1_GGBP Neighborhood of RT #3 [2638691, 2643901] AcrR RVT_N RVT-GII YkfC McrA Neighborhood of RT #4 [4096905, 4103287] PRK14453 Uup Uup RVT-GII GIIM pcaJ_scoB_fam Neighborhood of RT #5 [4923869, 4930258] ST7 Amidase_6 RVT-GII GIIM Adenylsuccinate_lyase_2 PTS_HPr_family Neighborhood of RT #6 [5059284, 5064764] rmlC PRK13342 RVT-GII GIIM COG5263 Neighborhood of RT #7 [5761511, 5767672] arb PRK14054 RVT-GII GIIM DUF4179 DUF5643 PRK06811 Feature: gene Location: 769425-770228 bp Feature: domain Description: PRK13962 Location: 769479-770226 bp Feature: domain Description: PRK1 3962 Location: 769479-770226 bp Feature: gene Location: 770525-772069 bp Feature: domain Description: PRK05434 Location: 770534-772058 bp Feature: domain Description: PRK05434 Location: 770534-772058 bp Feature: gene Location: 772584-773942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772884-773502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772884-773502 bp Feature: domain Description: GIIM Note: maturase Location: 773553-773781 bp Feature: domain Description: GIIM Note: maturase Location: 773553-773781 bp Feature: gene Location: 774208-774801 bp Feature: domain Description: COG2112 Location: 774259-774694 bp Feature: domain Description: COG21 1 2 Location: 774259-774694 bp Feature: gene Location: 775783-777075 bp Feature: domain Description: eno Location: 775801-777070 bp Feature: domain Description: eno Location: 775801 -777070 bp Feature: gene Location: 2357997-2358680 bp Feature: domain Description: HTH_28 Location: 2358030-2358177 bp Feature: domain Description: HTH_28 Location: 2358030-23581 77 bp Feature: domain Description: HTH_28 Location: 2358204-2358321 bp Feature: domain Description: HTH_28 Location: 2358204-2358321 bp Feature: domain Description: HTH_28 Location: 2358393-2358549 bp Feature: domain Description: HTH_28 Location: 2358393-2358549 bp Feature: gene Location: 2358809-2358958 bp Feature: gene Location: 2359619-2361436 bp Feature: RT Description: RVT_N Location: 2359676-2359916 bp Feature: RT Description: RVT_N Location: 2359676-235991 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359976-2360627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359976-2360627 bp Feature: domain Description: YkfC Location: 2360765-2360924 bp Feature: domain Description: YkfC Location: 2360765-2360924 bp Feature: domain Description: McrA Location: 2361095-2361320 bp Feature: domain Description: McrA Location: 2361 095-2361 320 bp Feature: gene Location: 2361550-2361792 bp Feature: gene Location: 2361981-2363033 bp Feature: domain Description: PBP1_GGBP Location: 2362095-2363016 bp Feature: domain Description: PBP1 _GGBP Location: 2362095-236301 6 bp Feature: gene Location: 2638691-2639371 bp Feature: domain Description: AcrR Location: 2638868-2639201 bp Feature: domain Description: AcrR Location: 2638868-2639201 bp Feature: gene Location: 2639663-2640196 bp Feature: gene Location: 2640937-2642754 bp Feature: RT Description: RVT_N Location: 2640994-2641234 bp Feature: RT Description: RVT_N Location: 2640994-2641 234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641294-2641945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641 294-2641 945 bp Feature: domain Description: YkfC Location: 2642083-2642242 bp Feature: domain Description: YkfC Location: 2642083-2642242 bp Feature: domain Description: McrA Location: 2642413-2642638 bp Feature: domain Description: McrA Location: 264241 3-2642638 bp Feature: gene Location: 2643068-2643235 bp Feature: gene Location: 2643443-2643901 bp Feature: gene Location: 4096905-4097939 bp Feature: domain Description: PRK14453 Location: 4096911-4097934 bp Feature: domain Description: PRK1 4453 Location: 409691 1 -4097934 bp Feature: gene Location: 4098102-4099580 bp Feature: domain Description: Uup Location: 4098105-4098345 bp Feature: domain Description: Uup Location: 40981 05-4098345 bp Feature: domain Description: Uup Location: 4098378-4099575 bp Feature: domain Description: Uup Location: 4098378-4099575 bp Feature: gene Location: 4099849-4101264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4100206-4100824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 00206-41 00824 bp Feature: domain Description: GIIM Note: maturase Location: 4100875-4101103 bp Feature: domain Description: GIIM Note: maturase Location: 41 00875-41 01 1 03 bp Feature: gene Location: 4101925-4102059 bp Feature: gene Location: 4102634-4103287 bp Feature: domain Description: pcaJ_scoB_fam Location: 4102646-4103255 bp Feature: domain Description: pcaJ_scoB_fam Location: 41 02646-41 03255 bp Feature: gene Location: 4923869-4925092 bp Feature: domain Description: ST7 Location: 4924349-4925030 bp Feature: domain Description: ST7 Location: 4924349-4925030 bp Feature: gene Location: 4925428-4926411 bp Feature: domain Description: Amidase_6 Location: 4925983-4926382 bp Feature: domain Description: Amidase_6 Location: 4925983-4926382 bp Feature: gene Location: 4926517-4927932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4926874-4927492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4926874-4927492 bp Feature: domain Description: GIIM Note: maturase Location: 4927543-4927771 bp Feature: domain Description: GIIM Note: maturase Location: 4927543-4927771 bp Feature: gene Location: 4928411-4929841 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 4928438-4929743 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 4928438-4929743 bp Feature: gene Location: 4929989-4930258 bp Feature: domain Description: PTS_HPr_family Location: 4930001-4930244 bp Feature: domain Description: PTS_HPr_family Location: 4930001 -4930244 bp Feature: gene Location: 5059284-5059874 bp Feature: domain Description: rmlC Location: 5059299-5059827 bp Feature: domain Description: rmlC Location: 5059299-5059827 bp Feature: gene Location: 5059949-5060230 bp Feature: domain Description: PRK13342 Location: 5059958-5060213 bp Feature: domain Description: PRK1 3342 Location: 5059958-506021 3 bp Feature: gene Location: 5060450-5061865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5060807-5061425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5060807-5061 425 bp Feature: domain Description: GIIM Note: maturase Location: 5061476-5061704 bp Feature: domain Description: GIIM Note: maturase Location: 5061 476-5061 704 bp Feature: gene Location: 5062443-5063357 bp Feature: domain Description: COG5263 Location: 5062530-5062818 bp Feature: domain Description: COG5263 Location: 5062530-506281 8 bp Feature: gene Location: 5063472-5064764 bp Feature: gene Location: 5761511-5762926 bp Feature: domain Description: arb Location: 5761523-5762918 bp Feature: domain Description: arb Location: 5761 523-576291 8 bp Feature: gene Location: 5763369-5763842 bp Feature: domain Description: PRK14054 Location: 5763372-5763837 bp Feature: domain Description: PRK1 4054 Location: 5763372-5763837 bp Feature: gene Location: 5763999-5765414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5764356-5764974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5764356-5764974 bp Feature: domain Description: GIIM Note: maturase Location: 5765025-5765253 bp Feature: domain Description: GIIM Note: maturase Location: 5765025-5765253 bp Feature: gene Location: 5765974-5767092 bp Feature: domain Description: DUF4179 Location: 5766097-5766376 bp Feature: domain Description: DUF41 79 Location: 5766097-5766376 bp Feature: domain Description: DUF5643 Location: 5766658-5766991 bp Feature: domain Description: DUF5643 Location: 5766658-5766991 bp Feature: gene Location: 5767094-5767672 bp Feature: domain Description: PRK06811 Location: 5767115-5767646 bp Feature: domain Description: PRK0681 1 Location: 57671 1 5-5767646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), RVT-GII, GIIM (pfam08388), COG2112 (Predicted Ser/Thr protein kinase ), eno (TIGR01060), HTH_28 (pfam13518), RVT_N (pfam13655), YkfC (COG3344), McrA (COG4058)
PBP1_GGBP (cd01539), AcrR (COG1309), PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional), Uup (COG0488), pcaJ_scoB_fam (TIGR02428), ST7 (pfam04184), Amidase_6 (pfam12671), Adenylsuccinate_lyase_2 (cd03302), PTS_HPr_family (TIGR01003), rmlC (TIGR01221)
PRK13342 (recombination factor protein RarA; Reviewed), COG5263 (Glucan-binding domain (YG repeat) ), arb (PRK09593), PRK14054 (peptide-methionine (S)-S-oxide reductase), DUF4179 (pfam13786), DUF5643 (pfam18705), PRK06811 (RNA polymerase factor sigma-70; Validated)