myRT

myRT report for GCA_013297345.1_ASM1329734v1

Download annotations/find similar RTs

Seq: JABTET010000008.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_08, whole genome shotgun sequence (160840 bp)
Overview 1 RT 1: 22735-25935 bp Neighborhood of RT #1 [22735, 25935] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 22735-22941 bp Feature: domain Description: DDE_Tnp_1 Location: 22765-22903 bp Feature: domain Description: DDE_Tnp_1 Location: 22765-22903 bp Feature: gene Location: 23033-23383 bp Feature: gene Location: 23854-24492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24190-24373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 90-24373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24376-24481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24376-24481 bp Feature: gene Location: 24920-25333 bp Feature: gene Location: 25801-25935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JABTET010000025.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_25, whole genome shotgun sequence (59550 bp)
Overview 1 RT 1: 24565-33283 bp Neighborhood of RT #1 [24565, 33283] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 24565-25092 bp Feature: domain Description: Sig70_famx3 Location: 24571-25054 bp Feature: domain Description: Sig70_famx3 Location: 2 4571-2 5054 bp Feature: gene Location: 25311-26336 bp Feature: domain Description: DUF1835 Location: 25326-25695 bp Feature: domain Description: DUF1835 Location: 2 532 6-2 5695 bp Feature: domain Description: DUF3658 Location: 25785-26097 bp Feature: domain Description: DUF3658 Location: 2 5785-2 6097 bp Feature: gene Location: 26924-28429 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27560-28202 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7560-2 82 02 bp Feature: gene Location: 28426-30234 bp Feature: gene Location: 30236-33283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons

Seq: JABTET010000035.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_35, whole genome shotgun sequence (47900 bp)
Overview 1 RT 1: 3375-11284 bp Neighborhood of RT #1 [3375, 11284] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 3375-5942 bp Feature: domain Description: UvrD Location: 3897-5025 bp Feature: domain Description: UvrD Location: 3 897-5025 bp Feature: domain Description: UvrD Location: 5202-5442 bp Feature: domain Description: UvrD Location: 5202-5442 bp Feature: gene Location: 6228-7235 bp Feature: gene Location: 7447-8571 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7663-8221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7663 -8221 bp Feature: gene Location: 8873-10177 bp Feature: domain Description: Enpp Location: 8891-10127 bp Feature: domain Description: Enpp Location: 8891-10127 bp Feature: gene Location: 10748-11284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABTET010000045.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_45, whole genome shotgun sequence (26013 bp)
Overview 1 RT 1: 41-3608 bp Neighborhood of RT #1 [41, 3610] PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 41-898 bp Feature: domain Description: PHA02517 Location: 329-878 bp Feature: domain Description: PHA02517 Location: 329-878 bp Feature: gene Location: 1424-2959 bp Feature: RT Description: RVT_N Location: 1496-1739 bp Feature: RT Description: RVT_N Location: 14 96-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784-2444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784 -24 4 4 bp Feature: domain Description: GIIM Note: maturase Location: 2495-2732 bp Feature: domain Description: GIIM Note: maturase Location: 24 95-2732 bp Feature: domain Description: rve_2 Location: 2876-2951 bp Feature: domain Description: rve_2 Location: 2876-2951 bp Feature: gene Location: 3033-3299 bp Feature: domain Description: plantaricin Location: 3054-3297 bp Feature: domain Description: plantaricin Location: 3054 -3297 bp Feature: gene Location: 3344-3610 bp Feature: domain Description: plantaricin Location: 3365-3608 bp Feature: domain Description: plantaricin Location: 3365-3608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABTET010000058.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_58, whole genome shotgun sequence (6805 bp)
Overview 1 RT 1: 3958-5933 bp Neighborhood of RT #1 [3958, 6163] rve_2 RVT_N RVT-GII GIIM Feature: gene Location: 3958-4107 bp Feature: gene Location: 4318-4464 bp Feature: domain Description: rve_2 Location: 4321-4456 bp Feature: domain Description: rve_2 Location: 4321-445 6 bp Feature: gene Location: 4625-6163 bp Feature: RT Description: RVT_N Location: 4697-4940 bp Feature: RT Description: RVT_N Location: 4697-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4985-5642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4985 -5 642 bp Feature: domain Description: GIIM Note: maturase Location: 5696-5933 bp Feature: domain Description: GIIM Note: maturase Location: 5 696-5 933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)