myRT

myRT report for GCA_013297365.1_ASM1329736v1

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Seq: JABTEV010000007.1 Clostridium saccharobutylicum strain DJ146 Ga0419087_07, whole genome shotgun sequence (227925 bp)
Overview 1 RT 1: 76753-85471 bp Neighborhood of RT #1 [76753, 85471] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 76753-77280 bp Feature: domain Description: Sig70_famx3 Location: 76759-77242 bp Feature: domain Description: Sig70_famx3 Location: 76759-77242 bp Feature: gene Location: 77499-78524 bp Feature: domain Description: DUF1835 Location: 77514-77883 bp Feature: domain Description: DUF1 835 Location: 7751 4-77883 bp Feature: domain Description: DUF3658 Location: 77973-78285 bp Feature: domain Description: DUF3658 Location: 77973-78285 bp Feature: gene Location: 79112-80617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79748-80390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79748-80390 bp Feature: gene Location: 80614-82422 bp Feature: gene Location: 82424-85471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons

Seq: JABTEV010000015.1 Clostridium saccharobutylicum strain DJ146 Ga0419087_15, whole genome shotgun sequence (81698 bp)
Overview 1 RT 1: 22735-25935 bp Neighborhood of RT #1 [22735, 25935] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 22735-22941 bp Feature: domain Description: DDE_Tnp_1 Location: 22765-22903 bp Feature: domain Description: DDE_Tnp_1 Location: 2 2 765-2 2 903 bp Feature: gene Location: 23033-23383 bp Feature: gene Location: 23854-24492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24190-24373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4190-2 4373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24376-24481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4376-2 4481 bp Feature: gene Location: 24920-25333 bp Feature: gene Location: 25801-25935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JABTEV010000035.1 Clostridium saccharobutylicum strain DJ146 Ga0419087_35, whole genome shotgun sequence (46823 bp)
Overview 1 RT 1: 36251-43660 bp Neighborhood of RT #1 [36251, 44160] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 36251-36787 bp Feature: gene Location: 37358-38662 bp Feature: domain Description: Enpp Location: 37376-38612 bp Feature: domain Description: Enpp Location: 3 73 76-3 8612 bp Feature: gene Location: 38964-40088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39180-39738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 9180-3 973 8 bp Feature: gene Location: 40300-41307 bp Feature: gene Location: 41593-44160 bp Feature: domain Description: UvrD Location: 42115-43243 bp Feature: domain Description: UvrD Location: 42115-43 243 bp Feature: domain Description: UvrD Location: 43420-43660 bp Feature: domain Description: UvrD Location: 43 420-43 660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Enpp (cd16018), RVT-Retrons, UvrD (COG0210)

Seq: JABTEV010000039.1 Clostridium saccharobutylicum strain DJ146 Ga0419087_39, whole genome shotgun sequence (26014 bp)
Overview 1 RT 1: 22404-25953 bp Neighborhood of RT #1 [22404, 25973] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 22404-22670 bp Feature: domain Description: plantaricin Location: 22425-22668 bp Feature: domain Description: plantaricin Location: 224 25-22668 bp Feature: gene Location: 22715-22981 bp Feature: domain Description: plantaricin Location: 22736-22979 bp Feature: domain Description: plantaricin Location: 22736-22979 bp Feature: gene Location: 23055-24590 bp Feature: RT Description: RVT_N Location: 23127-23370 bp Feature: RT Description: RVT_N Location: 23127-23370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23415-24075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 15-24 075 bp Feature: domain Description: GIIM Note: maturase Location: 24126-24363 bp Feature: domain Description: GIIM Note: maturase Location: 24 126-24 363 bp Feature: domain Description: rve_2 Location: 24507-24582 bp Feature: domain Description: rve_2 Location: 24 507-24 582 bp Feature: gene Location: 25116-25973 bp Feature: domain Description: PHA02517 Location: 25404-25953 bp Feature: domain Description: PHA02517 Location: 254 04 -25953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)