myRT

myRT report for GCA_013297425.1_ASM1329742v1

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Seq: JABUER010000007.1 Clostridium saccharobutylicum strain DJ005 Ga0419092_07, whole genome shotgun sequence (227718 bp)
Overview 1 RT 1: 142455-151135 bp Neighborhood of RT #1 [142455, 151173] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 142455-145502 bp Feature: gene Location: 145504-147312 bp Feature: gene Location: 147309-148814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147945-148587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 47945-1 48587 bp Feature: gene Location: 149402-150427 bp Feature: domain Description: DUF1835 Location: 149417-149786 bp Feature: domain Description: DUF1 835 Location: 1 4941 7-1 49786 bp Feature: domain Description: DUF3658 Location: 149876-150188 bp Feature: domain Description: DUF3658 Location: 1 49876-1 501 88 bp Feature: gene Location: 150646-151173 bp Feature: domain Description: Sig70_famx3 Location: 150652-151135 bp Feature: domain Description: Sig70_famx3 Location: 1 50652-1 51 1 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)

Seq: JABUER010000017.1 Clostridium saccharobutylicum strain DJ005 Ga0419092_17, whole genome shotgun sequence (81701 bp)
Overview 1 RT 1: 22735-25935 bp Neighborhood of RT #1 [22735, 25935] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 22735-22941 bp Feature: domain Description: DDE_Tnp_1 Location: 22765-22903 bp Feature: domain Description: DDE_Tnp_1 Location: 2 2 765-2 2 903 bp Feature: gene Location: 23033-23383 bp Feature: gene Location: 23854-24492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24190-24373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4190-2 4373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24376-24481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4376-2 4481 bp Feature: gene Location: 24920-25333 bp Feature: gene Location: 25801-25935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JABUER010000035.1 Clostridium saccharobutylicum strain DJ005 Ga0419092_35, whole genome shotgun sequence (46823 bp)
Overview 1 RT 1: 2664-10573 bp Neighborhood of RT #1 [2664, 10573] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2664-5231 bp Feature: domain Description: UvrD Location: 3186-4314 bp Feature: domain Description: UvrD Location: 3 186-43 14 bp Feature: domain Description: UvrD Location: 4491-4731 bp Feature: domain Description: UvrD Location: 4491-473 1 bp Feature: gene Location: 5517-6524 bp Feature: gene Location: 6736-7860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6952-7510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6952-7510 bp Feature: gene Location: 8162-9466 bp Feature: domain Description: Enpp Location: 8180-9416 bp Feature: domain Description: Enpp Location: 8180-9416 bp Feature: gene Location: 10037-10573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABUER010000039.1 Clostridium saccharobutylicum strain DJ005 Ga0419092_39, whole genome shotgun sequence (26014 bp)
Overview 1 RT 1: 22404-25953 bp Neighborhood of RT #1 [22404, 25973] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 22404-22670 bp Feature: domain Description: plantaricin Location: 22425-22668 bp Feature: domain Description: plantaricin Location: 224 25-22668 bp Feature: gene Location: 22715-22981 bp Feature: domain Description: plantaricin Location: 22736-22979 bp Feature: domain Description: plantaricin Location: 22736-22979 bp Feature: gene Location: 23055-24590 bp Feature: RT Description: RVT_N Location: 23127-23370 bp Feature: RT Description: RVT_N Location: 23127-23370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23415-24075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 15-24 075 bp Feature: domain Description: GIIM Note: maturase Location: 24126-24363 bp Feature: domain Description: GIIM Note: maturase Location: 24 126-24 363 bp Feature: domain Description: rve_2 Location: 24507-24582 bp Feature: domain Description: rve_2 Location: 24 507-24 582 bp Feature: gene Location: 25116-25973 bp Feature: domain Description: PHA02517 Location: 25404-25953 bp Feature: domain Description: PHA02517 Location: 254 04 -25953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)