myRT

myRT report for GCA_013299165.1_ASM1329916v1

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Seq: JAAFKD010000001.1 Microcoleus sp. bin38.metabat.b11b12b14.051 WN_Microcoleus_2_scaffold_1, whole genome shotgun sequence (578324 bp)
Overview 1 RT 1: 394405-403189 bp 2 RT 2: 420722-424800 bp Neighborhood of RT #1 [394405, 403290] CcdA GAF_3 BaeS RVT_N RVT-GII GIIM HNHc FhlA PAS PAS Neighborhood of RT #2 [420722, 424800] Rnc RVT-Retrons CE4_NodB_like_5s_6s Feature: gene Location: 394405-394632 bp Feature: domain Description: CcdA Location: 394447-394579 bp Feature: domain Description: CcdA Location: 394447-394579 bp Feature: gene Location: 395260-397158 bp Feature: domain Description: GAF_3 Location: 395824-395983 bp Feature: domain Description: GAF_3 Location: 395824-395983 bp Feature: domain Description: BaeS Location: 396328-397138 bp Feature: domain Description: BaeS Location: 396328-3971 38 bp Feature: gene Location: 398003-399664 bp Feature: RT Description: RVT_N Location: 398054-398294 bp Feature: RT Description: RVT_N Location: 398054-398294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398339-398966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398339-398966 bp Feature: domain Description: GIIM Note: maturase Location: 399026-399251 bp Feature: domain Description: GIIM Note: maturase Location: 399026-399251 bp Feature: domain Description: HNHc Note: nucleases Location: 399479-399635 bp Feature: domain Description: HNHc Note: nucleases Location: 399479-399635 bp Feature: gene Location: 400566-401396 bp Feature: domain Description: FhlA Location: 400593-401238 bp Feature: domain Description: FhlA Location: 400593-401 238 bp Feature: gene Location: 401752-403290 bp Feature: domain Description: PAS Location: 401977-402418 bp Feature: domain Description: PAS Location: 401 977-40241 8 bp Feature: domain Description: PAS Location: 402682-403189 bp Feature: domain Description: PAS Location: 402682-4031 89 bp Feature: gene Location: 420722-420949 bp Feature: gene Location: 420963-421679 bp Feature: domain Description: Rnc Location: 421008-421665 bp Feature: domain Description: Rnc Location: 421 008-421 665 bp Feature: gene Location: 421717-423114 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 422263-422881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 422263-422881 bp Feature: gene Location: 423559-424560 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 423997-424489 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 423997-424489 bp Feature: gene Location: 424600-424800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcdA (pfam07362), GAF_3 (pfam13492), BaeS (COG0642), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), FhlA (COG3604), PAS (smart00091), Rnc (COG0571)
RVT-Retrons, CE4_NodB_like_5s_6s (cd10918)

Seq: JAAFKD010000014.1 Microcoleus sp. bin38.metabat.b11b12b14.051 WN_Microcoleus_2_scaffold_14, whole genome shotgun sequence (184754 bp)
Overview 1 RT 1: 144778-150206 bp Neighborhood of RT #1 [144778, 150229] Uma2 InsQ RVT_N RVT-GII McrA InsQ YfbK Feature: gene Location: 144778-145395 bp Feature: domain Description: Uma2 Location: 144874-145378 bp Feature: domain Description: Uma2 Location: 144874-145378 bp Feature: gene Location: 145445-146209 bp Feature: domain Description: InsQ Location: 145448-146198 bp Feature: domain Description: InsQ Location: 145448-146198 bp Feature: gene Location: 146745-148265 bp Feature: RT Description: RVT_N Location: 146781-147027 bp Feature: RT Description: RVT_N Location: 146781-14702 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147078-147672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147078-147672 bp Feature: domain Description: McrA Location: 147906-148227 bp Feature: domain Description: McrA Location: 147906-1482 2 7 bp Feature: gene Location: 148431-148793 bp Feature: domain Description: InsQ Location: 148434-148698 bp Feature: domain Description: InsQ Location: 148434-148698 bp Feature: gene Location: 148994-150229 bp Feature: domain Description: YfbK Location: 149021-150206 bp Feature: domain Description: YfbK Location: 14902 1-1502 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, McrA (COG4058), YfbK (COG2304)

Seq: JAAFKD010000026.1 Microcoleus sp. bin38.metabat.b11b12b14.051 WN_Microcoleus_2_scaffold_26, whole genome shotgun sequence (89850 bp)
Overview 1 RT 1: 40884-44622 bp Neighborhood of RT #1 [40884, 45089] RRXRR RVT-GII McrA RVT_N RVT-GII RVT_N MscS Feature: gene Location: 40884-41042 bp Feature: gene Location: 41102-41419 bp Feature: domain Description: RRXRR Location: 41120-41411 bp Feature: domain Description: RRXRR Location: 41120-41411 bp Feature: gene Location: 41650-42387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41665-41794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41665-41794 bp Feature: domain Description: McrA Location: 41878-42364 bp Feature: domain Description: McrA Location: 41878-423 64 bp Feature: gene Location: 42475-43056 bp Feature: RT Description: RVT_N Location: 42478-42583 bp Feature: RT Description: RVT_N Location: 42478-42583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42637-43054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4263 7-43 054 bp Feature: gene Location: 42953-43312 bp Feature: RT Description: RVT_N Location: 43073-43208 bp Feature: RT Description: RVT_N Location: 43 073 -43 208 bp Feature: gene Location: 43827-45089 bp Feature: domain Description: MscS Location: 43848-44622 bp Feature: domain Description: MscS Location: 43 848-44622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRXRR (pfam14239), RVT-GII, McrA (COG4058), RVT_N (pfam13655), MscS (COG0668)

Seq: JAAFKD010000005.1 Microcoleus sp. bin38.metabat.b11b12b14.051 WN_Microcoleus_2_scaffold_5, whole genome shotgun sequence (312366 bp)
Overview 1 RT 1: 176283-183236 bp 2 RT 2: 249074-254836 bp Neighborhood of RT #1 [176283, 183361] RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM McrA HTH_19 Neighborhood of RT #2 [249074, 254862] PBP2_TMBP_like RVT_N RVT-GII GIIM McrA clan_AA_DTGF Uma2 Feature: gene Location: 176283-176651 bp Feature: gene Location: 176713-176961 bp Feature: gene Location: 177041-178834 bp Feature: RT Description: RVT_N Location: 177077-177323 bp Feature: RT Description: RVT_N Location: 177077-177323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177371-178055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177371-178055 bp Feature: domain Description: GIIM Note: maturase Location: 178139-178370 bp Feature: domain Description: GIIM Note: maturase Location: 178139-178370 bp Feature: domain Description: McrA Location: 178451-178733 bp Feature: domain Description: McrA Location: 1784 51-178733 bp Feature: gene Location: 179035-179187 bp Feature: gene Location: 179399-179542 bp Feature: gene Location: 179736-181505 bp Feature: RT Description: RVT_N Location: 179778-180024 bp Feature: RT Description: RVT_N Location: 179778-180024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180066-180741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180066-18074 1 bp Feature: domain Description: GIIM Note: maturase Location: 180840-181038 bp Feature: domain Description: GIIM Note: maturase Location: 18084 0-181038 bp Feature: domain Description: McrA Location: 181140-181410 bp Feature: domain Description: McrA Location: 18114 0-1814 10 bp Feature: gene Location: 182518-182784 bp Feature: gene Location: 183014-183361 bp Feature: domain Description: HTH_19 Location: 183056-183236 bp Feature: domain Description: HTH_19 Location: 183056-183236 bp Feature: gene Location: 249074-249403 bp Feature: gene Location: 249410-250714 bp Feature: domain Description: PBP2_TMBP_like Location: 249548-250703 bp Feature: domain Description: PBP2_TMBP_like Location: 24 954 8-250703 bp Feature: gene Location: 251760-253481 bp Feature: RT Description: RVT_N Location: 251802-252048 bp Feature: RT Description: RVT_N Location: 251802-25204 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252090-252765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252090-252765 bp Feature: domain Description: GIIM Note: maturase Location: 252864-253089 bp Feature: domain Description: GIIM Note: maturase Location: 252864 -253089 bp Feature: domain Description: McrA Location: 253170-253443 bp Feature: domain Description: McrA Location: 253170-2534 4 3 bp Feature: gene Location: 253644-254063 bp Feature: domain Description: clan_AA_DTGF Location: 253752-254013 bp Feature: domain Description: clan_AA_DTGF Location: 253752-254 013 bp Feature: gene Location: 254287-254862 bp Feature: domain Description: Uma2 Location: 254296-254836 bp Feature: domain Description: Uma2 Location: 254 296-254 836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HTH_19 (pfam12844), PBP2_TMBP_like (cd13585), clan_AA_DTGF, Uma2 (pfam05685)

Seq: JAAFKD010000006.1 Microcoleus sp. bin38.metabat.b11b12b14.051 WN_Microcoleus_2_scaffold_6, whole genome shotgun sequence (264984 bp)
Overview 1 RT 1: 177502-183622 bp Neighborhood of RT #1 [177502, 183912] Y1_Tnp RAYT RVT_N RVT-GII McrA InsQ TMAO_torS TMAO_torS Feature: gene Location: 177502-177669 bp Feature: domain Description: Y1_Tnp Location: 177505-177655 bp Feature: domain Description: Y1_Tnp Location: 1775 05 -17765 5 bp Feature: gene Location: 177734-177913 bp Feature: domain Description: RAYT Location: 177761-177905 bp Feature: domain Description: RAYT Location: 177761-177905 bp Feature: gene Location: 178527-180101 bp Feature: RT Description: RVT_N Location: 178563-178800 bp Feature: RT Description: RVT_N Location: 1785 63-178800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178860-179514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178860-1795 14 bp Feature: domain Description: McrA Location: 179745-180069 bp Feature: domain Description: McrA Location: 179745 -180069 bp Feature: gene Location: 180128-181327 bp Feature: domain Description: InsQ Location: 180191-181274 bp Feature: domain Description: InsQ Location: 180191-181274 bp Feature: gene Location: 181975-183912 bp Feature: domain Description: TMAO_torS Location: 182005-182362 bp Feature: domain Description: TMAO_torS Location: 182005 -182362 bp Feature: domain Description: TMAO_torS Location: 182365-183622 bp Feature: domain Description: TMAO_torS Location: 182365 -183622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), RAYT (COG1943), RVT_N (pfam13655), RVT-GII, McrA (COG4058), InsQ (COG0675), TMAO_torS (TIGR02956)