myRT

myRT report for GCA_013299685.1_ASM1329968v1

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Seq: JABMHY010000002.1 Coprococcus comes strain MSK.17.45 NODE_2_length_224362_cov_190.809, whole genome shotgun sequence (224362 bp)
Overview 1 RT 1: 47016-52274 bp 2 RT 2: 110383-113009 bp Neighborhood of RT #1 [47016, 52333] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII GIIM KptA Metallophos Neighborhood of RT #2 [110383, 113017] RVT-DGRs Avd_like Feature: gene Location: 47016-48683 bp Feature: domain Description: SR_TndX_transposase Location: 47043-47457 bp Feature: domain Description: SR_TndX_transposase Location: 47043-47457 bp Feature: domain Description: Recombinase Location: 47559-47922 bp Feature: domain Description: Recombinase Location: 47559-47922 bp Feature: domain Description: Zn_ribbon_recom Location: 47958-48138 bp Feature: domain Description: Zn_ribbon_recom Location: 47958-481 38 bp Feature: domain Description: DUF4368 Location: 48414-48606 bp Feature: domain Description: DUF4368 Location: 4841 4-48606 bp Feature: gene Location: 48838-48993 bp Feature: gene Location: 49334-50638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49634-50255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49634-50255 bp Feature: domain Description: GIIM Note: maturase Location: 50327-50549 bp Feature: domain Description: GIIM Note: maturase Location: 50327-50549 bp Feature: gene Location: 51369-51575 bp Feature: domain Description: KptA Location: 51375-51564 bp Feature: domain Description: KptA Location: 51 375-51 564 bp Feature: gene Location: 51578-52333 bp Feature: domain Description: Metallophos Location: 51584-52274 bp Feature: domain Description: Metallophos Location: 51 584-52274 bp Feature: gene Location: 110383-110754 bp Feature: gene Location: 110767-111123 bp Feature: gene Location: 111114-112253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111336-112005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 336-1 1 2005 bp Feature: gene Location: 112431-112736 bp Feature: gene Location: 112673-113017 bp Feature: domain Description: Avd_like Location: 112697-113009 bp Feature: domain Description: Avd_like Location: 1 1 2697-1 1 3009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, GIIM (pfam08388), KptA (COG1859), Metallophos (pfam00149), RVT-DGRs, Avd_like (cd16376)

Seq: JABMHY010000042.1 Coprococcus comes strain MSK.17.45 NODE_43_length_4159_cov_581.562, whole genome shotgun sequence (4159 bp)
Overview 1 RT 1: 1-2613 bp Neighborhood of RT #1 [1, 2702] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 1-228 bp Feature: domain Description: PHA00653 Location: 16-226 bp Feature: domain Description: PHA00653 Location: 16-2 2 6 bp Feature: gene Location: 269-625 bp Feature: domain Description: Avd_like Location: 299-605 bp Feature: domain Description: Avd_like Location: 2 99-605 bp Feature: gene Location: 952-2013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1810 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1810 bp Feature: gene Location: 2038-2217 bp Feature: gene Location: 2214-2702 bp Feature: domain Description: Phage_holin_4_1 Location: 2253-2613 bp Feature: domain Description: Phage_holin_4_1 Location: 2 2 53-2 613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Phage_holin_4_1 (pfam05105), Avd_like (cd16376), RVT-DGRs