myRT

myRT report for GCA_013300305.1_ASM1330030v1

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Seq: JAAINU010000101.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_102_length_708_cov_432.243, whole genome shotgun sequence (708 bp)
Overview 1 RT 1: 254-692 bp Neighborhood of RT #1 [254, 706] RVT-GII Feature: gene Location: 254-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAINU010000013.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_13_length_91012_cov_212.453, whole genome shotgun sequence (91012 bp)
Overview 1 RT 1: 35021-38714 bp Neighborhood of RT #1 [35021, 38714] TnpV TraG-D_C RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 35021-35398 bp Feature: domain Description: TnpV Location: 35066-35390 bp Feature: domain Description: TnpV Location: 35066-35390 bp Feature: gene Location: 35451-36359 bp Feature: domain Description: TraG-D_C Location: 35991-36279 bp Feature: domain Description: TraG-D_C Location: 35991-362 79 bp Feature: gene Location: 36503-37561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36506-36881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36506-36881 bp Feature: domain Description: GIIM Note: maturase Location: 36932-37166 bp Feature: domain Description: GIIM Note: maturase Location: 36932 -37166 bp Feature: gene Location: 37377-38168 bp Feature: RT Description: RVT_N Location: 37422-37665 bp Feature: RT Description: RVT_N Location: 3742 2 -37665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37710-38025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37710-3802 5 bp Feature: gene Location: 38116-38409 bp Feature: gene Location: 38433-38714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), TraG-D_C (pfam12696), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JAAINU010000016.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_16_length_86406_cov_174.496, whole genome shotgun sequence (86406 bp)
Overview 1 RT 1: 74670-78685 bp Neighborhood of RT #1 [74670, 78687] AAA-ATPase_like PDDEXK_9 RVT-GII INT_RitC_C_like xerC Feature: gene Location: 74670-75023 bp Feature: gene Location: 74945-76387 bp Feature: domain Description: AAA-ATPase_like Location: 74951-75596 bp Feature: domain Description: AAA-ATPase_like Location: 74951-75596 bp Feature: domain Description: PDDEXK_9 Location: 76073-76373 bp Feature: domain Description: PDDEXK_9 Location: 76073 -763 73 bp Feature: gene Location: 76863-77627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77178-77559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77178-77559 bp Feature: gene Location: 77674-78105 bp Feature: domain Description: INT_RitC_C_like Location: 77680-78019 bp Feature: domain Description: INT_RitC_C_like Location: 77680-78019 bp Feature: gene Location: 78196-78687 bp Feature: domain Description: xerC Location: 78214-78685 bp Feature: domain Description: xerC Location: 78214-78685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, INT_RitC_C_like (cd01182), xerC (PRK01287)

Seq: JAAINU010000039.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_39_length_14269_cov_161.576, whole genome shotgun sequence (14269 bp)
Overview 1 RT 1: 9467-13926 bp Neighborhood of RT #1 [9467, 14000] pfam13191 TPR IS285 RVT-GII Feature: gene Location: 9467-11824 bp Feature: domain Description: pfam13191 Location: 9974-10127 bp Feature: domain Description: pfam13191 Location: 9974 -10127 bp Feature: domain Description: TPR Location: 11108-11792 bp Feature: domain Description: TPR Location: 11108-11792 bp Feature: gene Location: 12076-13317 bp Feature: domain Description: IS285 Location: 12148-13309 bp Feature: domain Description: IS285 Location: 1214 8-13309 bp Feature: gene Location: 13548-14000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13866-13926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13866-13926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, pfam13191 (AAA_16;AAA ATPase domain), TPR (smart00028)

Seq: JAAINU010000058.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_59_length_3933_cov_167.95, whole genome shotgun sequence (3933 bp)
Overview 1 RT 1: 123-3458 bp Neighborhood of RT #1 [123, 3511] HTH_XRE RVT-GII VanZ Feature: gene Location: 123-956 bp Feature: domain Description: HTH_XRE Location: 177-348 bp Feature: domain Description: HTH_XRE Location: 177-348 bp Feature: gene Location: 1132-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387-2077 bp Feature: gene Location: 2517-2762 bp Feature: gene Location: 2918-3511 bp Feature: domain Description: VanZ Location: 2966-3458 bp Feature: domain Description: VanZ Location: 2966-345 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_XRE (smart00530), VanZ (pfam04892)

Seq: JAAINU010000072.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_73_length_1851_cov_877.552, whole genome shotgun sequence (1851 bp)
Overview 1 RT 1: 495-1611 bp Neighborhood of RT #1 [495, 1772] RVT-GII GIIM Feature: gene Location: 495-1772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1389-1611 bp Feature: domain Description: GIIM Note: maturase Location: 1389-16 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAINU010000078.1 Fusicatenibacter saccharivorans strain MSK.22.33 NODE_79_length_1692_cov_241.047, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 3-826 bp Neighborhood of RT #1 [3, 1140] RVT-GII MFS Feature: gene Location: 3-275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: gene Location: 309-491 bp Feature: gene Location: 577-1140 bp Feature: domain Description: MFS Location: 592-826 bp Feature: domain Description: MFS Location: 592-826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MFS (cl28910)