myRT

myRT report for GCA_013300315.1_ASM1330031v1

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Seq: JAAILK010000039.1 Coprococcus comes strain MSK.17.80 NODE_40_length_4114_cov_696.304, whole genome shotgun sequence (4114 bp)
Overview 1 RT 1: 1-2613 bp Neighborhood of RT #1 [1, 2702] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 1-228 bp Feature: domain Description: PHA00653 Location: 16-226 bp Feature: domain Description: PHA00653 Location: 1 6-226 bp Feature: gene Location: 269-625 bp Feature: domain Description: Avd_like Location: 299-605 bp Feature: domain Description: Avd_like Location: 299-605 bp Feature: gene Location: 952-2013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1810 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 89-1 81 0 bp Feature: gene Location: 2038-2217 bp Feature: gene Location: 2214-2702 bp Feature: domain Description: Phage_holin_4_1 Location: 2253-2613 bp Feature: domain Description: Phage_holin_4_1 Location: 2253-261 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Phage_holin_4_1 (pfam05105), Avd_like (cd16376), RVT-DGRs

Seq: JAAILK010000005.1 Coprococcus comes strain MSK.17.80 NODE_5_length_177207_cov_217.205, whole genome shotgun sequence (177207 bp)
Overview 1 RT 1: 47016-52274 bp Neighborhood of RT #1 [47016, 52333] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII GIIM KptA Metallophos Feature: gene Location: 47016-48683 bp Feature: domain Description: SR_TndX_transposase Location: 47043-47457 bp Feature: domain Description: SR_TndX_transposase Location: 47043-47457 bp Feature: domain Description: Recombinase Location: 47559-47922 bp Feature: domain Description: Recombinase Location: 47559-4792 2 bp Feature: domain Description: Zn_ribbon_recom Location: 47958-48138 bp Feature: domain Description: Zn_ribbon_recom Location: 47958-48138 bp Feature: domain Description: DUF4368 Location: 48414-48606 bp Feature: domain Description: DUF4368 Location: 48414-48606 bp Feature: gene Location: 48838-48993 bp Feature: gene Location: 49334-50638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49634-50255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49634-502 55 bp Feature: domain Description: GIIM Note: maturase Location: 50327-50549 bp Feature: domain Description: GIIM Note: maturase Location: 5032 7-50549 bp Feature: gene Location: 51369-51575 bp Feature: domain Description: KptA Location: 51375-51564 bp Feature: domain Description: KptA Location: 51375-51564 bp Feature: gene Location: 51578-52333 bp Feature: domain Description: Metallophos Location: 51584-52274 bp Feature: domain Description: Metallophos Location: 51584-52 2 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, GIIM (pfam08388), KptA (COG1859), Metallophos (pfam00149)