myRT

myRT report for GCA_013300605.1_ASM1330060v1

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Seq: JAAIMF010000001.1 Coprococcus comes strain MSK.17.39 NODE_1_length_390335_cov_170.529, whole genome shotgun sequence (390335 bp)
Overview 1 RT 1: 302467-305093 bp Neighborhood of RT #1 [302467, 305101] RVT-DGRs Avd_like Feature: gene Location: 302467-302838 bp Feature: gene Location: 302851-303207 bp Feature: gene Location: 303198-304337 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 303420-304089 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 303420-304089 bp Feature: gene Location: 304515-304715 bp Feature: gene Location: 304757-305101 bp Feature: domain Description: Avd_like Location: 304781-305093 bp Feature: domain Description: Avd_like Location: 304781 -305093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: JAAIMF010000042.1 Coprococcus comes strain MSK.17.39 NODE_43_length_4114_cov_562.929, whole genome shotgun sequence (4114 bp)
Overview 1 RT 1: 1-2613 bp Neighborhood of RT #1 [1, 2702] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 1-228 bp Feature: domain Description: PHA00653 Location: 16-226 bp Feature: domain Description: PHA00653 Location: 16-2 2 6 bp Feature: gene Location: 269-625 bp Feature: domain Description: Avd_like Location: 299-605 bp Feature: domain Description: Avd_like Location: 2 99-605 bp Feature: gene Location: 952-2013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1810 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1189-1810 bp Feature: gene Location: 2038-2217 bp Feature: gene Location: 2214-2702 bp Feature: domain Description: Phage_holin_4_1 Location: 2253-2613 bp Feature: domain Description: Phage_holin_4_1 Location: 2 2 53-2 613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Phage_holin_4_1 (pfam05105), Avd_like (cd16376), RVT-DGRs

Seq: JAAIMF010000007.1 Coprococcus comes strain MSK.17.39 NODE_7_length_137454_cov_174.525, whole genome shotgun sequence (137454 bp)
Overview 1 RT 1: 7263-12521 bp Neighborhood of RT #1 [7263, 12580] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII GIIM KptA Metallophos Feature: gene Location: 7263-8930 bp Feature: domain Description: SR_TndX_transposase Location: 7290-7704 bp Feature: domain Description: SR_TndX_transposase Location: 7290-7704 bp Feature: domain Description: Recombinase Location: 7806-8169 bp Feature: domain Description: Recombinase Location: 7806-8169 bp Feature: domain Description: Zn_ribbon_recom Location: 8205-8385 bp Feature: domain Description: Zn_ribbon_recom Location: 8205-83 85 bp Feature: domain Description: DUF4368 Location: 8661-8853 bp Feature: domain Description: DUF43 68 Location: 8661-8853 bp Feature: gene Location: 9085-9240 bp Feature: gene Location: 9581-10885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9881-10502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9881-10502 bp Feature: domain Description: GIIM Note: maturase Location: 10574-10796 bp Feature: domain Description: GIIM Note: maturase Location: 10574-10796 bp Feature: gene Location: 11616-11822 bp Feature: domain Description: KptA Location: 11622-11811 bp Feature: domain Description: KptA Location: 11622-11811 bp Feature: gene Location: 11825-12580 bp Feature: domain Description: Metallophos Location: 11831-12521 bp Feature: domain Description: Metallophos Location: 1183 1-12521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KptA (COG1859), Metallophos (pfam00149), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, GIIM (pfam08388)