myRT

myRT report for GCA_013300725.1_ASM1330072v1

Download annotations/find similar RTs

Seq: JAAIMM010000035.1 Coprococcus comes strain MSK.16.63 NODE_35_length_25469_cov_257.801, whole genome shotgun sequence (25469 bp)
Overview 1 RT 1: 18442-21549 bp Neighborhood of RT #1 [18442, 21549] RVT-DGRs Feature: gene Location: 18442-19572 bp Feature: gene Location: 19637-19846 bp Feature: gene Location: 19980-21110 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20184-20847 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 201 84-20847 bp Feature: gene Location: 21107-21370 bp Feature: gene Location: 21373-21549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JAAIMM010000009.1 Coprococcus comes strain MSK.16.63 NODE_9_length_113062_cov_292.969, whole genome shotgun sequence (113062 bp)
Overview 1 RT 1: 53308-59903 bp Neighborhood of RT #1 [53308, 59911] DUF3801 VirD4 RVT-GII SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TnpV Feature: gene Location: 53308-53871 bp Feature: domain Description: DUF3801 Location: 53500-53851 bp Feature: domain Description: DUF3801 Location: 53500-53851 bp Feature: gene Location: 53868-54671 bp Feature: domain Description: VirD4 Location: 54126-54633 bp Feature: domain Description: VirD4 Location: 5412 6-54633 bp Feature: gene Location: 55330-57237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55660-56404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55660-56404 bp Feature: gene Location: 57384-59570 bp Feature: domain Description: SR_TndX_transposase Location: 57708-58137 bp Feature: domain Description: SR_TndX_transposase Location: 57708-58137 bp Feature: domain Description: Recombinase Location: 58233-58593 bp Feature: domain Description: Recombinase Location: 582 33-58593 bp Feature: domain Description: Zn_ribbon_recom Location: 58638-58824 bp Feature: domain Description: Zn_ribbon_recom Location: 58638-5882 4 bp Feature: domain Description: DUF4368 Location: 59100-59295 bp Feature: domain Description: DUF4368 Location: 59100-592 95 bp Feature: gene Location: 59567-59911 bp Feature: domain Description: TnpV Location: 59579-59903 bp Feature: domain Description: TnpV Location: 59579-59903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), TnpV (pfam14198)