myRT

myRT report for GCA_013300875.1_ASM1330087v1

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Seq: JAAIMZ010000001.1 [Clostridium] symbiosum strain MSK.1.7 NODE_1_length_241915_cov_244.563, whole genome shotgun sequence (241915 bp)
Overview 1 RT 1: 11021-19356 bp 2 RT 2: 123378-129370 bp Neighborhood of RT #1 [11021, 19356] Virulence_RhuM RVT-Retrons Trypsin_2 SIR2 Piwi_piwi-like_ProArk Neighborhood of RT #2 [123378, 129370] PrgI VirB4_CagE TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 11021-11281 bp Feature: gene Location: 11422-12465 bp Feature: domain Description: Virulence_RhuM Location: 11647-12397 bp Feature: domain Description: Virulence_RhuM Location: 1 1 647-1 2397 bp Feature: gene Location: 12822-14486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12972-13563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2972-1 3563 bp Feature: domain Description: Trypsin_2 Location: 13980-14391 bp Feature: domain Description: Trypsin_2 Location: 1 3980-1 4391 bp Feature: gene Location: 14693-17833 bp Feature: domain Description: SIR2 Location: 14762-15260 bp Feature: domain Description: SIR2 Location: 1 4762-1 5260 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 16523-17780 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 1 6523-1 7780 bp Feature: gene Location: 17950-19356 bp Feature: gene Location: 123378-123800 bp Feature: domain Description: PrgI Location: 123426-123699 bp Feature: domain Description: PrgI Location: 1 23426-1 23699 bp Feature: gene Location: 123754-125901 bp Feature: domain Description: VirB4_CagE Location: 123847-124084 bp Feature: domain Description: VirB4_CagE Location: 1 23847-1 24084 bp Feature: domain Description: TraC-F-type Location: 124522-125863 bp Feature: domain Description: TraC-F-type Location: 1 24522-1 25863 bp Feature: gene Location: 126394-128184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126661-127474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26661 -1 27474 bp Feature: domain Description: Intron_maturas2 Location: 127558-127852 bp Feature: domain Description: Intron_maturas2 Location: 1 27558-1 27852 bp Feature: gene Location: 128293-128643 bp Feature: gene Location: 128561-129370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-Retrons, Trypsin_2 (pfam13365), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JAAIMZ010000022.1 [Clostridium] symbiosum strain MSK.1.7 NODE_22_length_59154_cov_260.215, whole genome shotgun sequence (59154 bp)
Overview 1 RT 1: 56753-59018 bp Neighborhood of RT #1 [56753, 59018] RVT-GII GIIM Feature: gene Location: 56753-56914 bp Feature: gene Location: 56968-57183 bp Feature: gene Location: 57346-58527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57487-58174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57487-58174 bp Feature: domain Description: GIIM Note: maturase Location: 58252-58459 bp Feature: domain Description: GIIM Note: maturase Location: 582 52 -58459 bp Feature: gene Location: 58653-59018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIMZ010000065.1 [Clostridium] symbiosum strain MSK.1.7 NODE_65_length_26717_cov_262.125, whole genome shotgun sequence (26717 bp)
Overview 1 RT 1: 22725-26511 bp Neighborhood of RT #1 [22725, 26513] LysR RVT-Retrons YuiF Feature: gene Location: 22725-22862 bp Feature: gene Location: 22904-23848 bp Feature: domain Description: LysR Location: 22943-23801 bp Feature: domain Description: LysR Location: 22943 -23 801 bp Feature: gene Location: 23907-24893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24072-24627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24072-24627 bp Feature: gene Location: 24921-25133 bp Feature: gene Location: 25191-26513 bp Feature: domain Description: YuiF Location: 25212-26511 bp Feature: domain Description: YuiF Location: 25212-26511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-Retrons, YuiF (COG2056)