myRT

myRT report for GCA_013300905.1_ASM1330090v1

Download annotations/find similar RTs

Seq: JAAINI010000003.1 Fusicatenibacter saccharivorans strain MSK.18.88 NODE_3_length_193626_cov_239.628, whole genome shotgun sequence (193626 bp)
Overview 1 RT 1: 181604-187027 bp Neighborhood of RT #1 [181604, 187038] DUF3801 TraG_VirD4 RVT-GII VirD4 Maff2 Feature: gene Location: 181604-182104 bp Feature: domain Description: DUF3801 Location: 181685-182090 bp Feature: domain Description: DUF3801 Location: 1 81 685-1 82090 bp Feature: gene Location: 182101-182946 bp Feature: domain Description: TraG_VirD4 Location: 182530-182908 bp Feature: domain Description: TraG_VirD4 Location: 1 82530-1 82908 bp Feature: gene Location: 183605-185512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183935-184679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83935-1 84679 bp Feature: gene Location: 185656-186681 bp Feature: domain Description: VirD4 Location: 185794-186580 bp Feature: domain Description: VirD4 Location: 1 85794-1 86580 bp Feature: gene Location: 186898-187038 bp Feature: domain Description: Maff2 Location: 186901-187027 bp Feature: domain Description: Maff2 Location: 1 86901 -1 87027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), TraG_VirD4, RVT-GII, VirD4 (COG3505), Maff2 (pfam12750)

Seq: JAAINI010000004.1 Fusicatenibacter saccharivorans strain MSK.18.88 NODE_4_length_192408_cov_299.991, whole genome shotgun sequence (192408 bp)
Overview 1 RT 1: 54765-60191 bp Neighborhood of RT #1 [54765, 60412] Tail_P2_I pfam12571 RVT-DGRs Phage_XkdX PRK03918 Feature: gene Location: 54765-55682 bp Feature: domain Description: Tail_P2_I Location: 54834-55224 bp Feature: domain Description: Tail_P2 _I Location: 54834-552 2 4 bp Feature: gene Location: 55682-57595 bp Feature: domain Description: pfam12571 Location: 55706-56159 bp Feature: domain Description: pfam12 571 Location: 55706-56159 bp Feature: gene Location: 58048-59184 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58288-58927 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 582 88-5892 7 bp Feature: gene Location: 59535-59669 bp Feature: domain Description: Phage_XkdX Location: 59541-59646 bp Feature: domain Description: Phage_XkdX Location: 59541-59646 bp Feature: gene Location: 59747-60412 bp Feature: domain Description: PRK03918 Location: 59942-60191 bp Feature: domain Description: PRK03918 Location: 59942 -60191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tail_P2_I (pfam09684), pfam12571 (DUF3751;Phage tail-collar fibre protein), RVT-DGRs, Phage_XkdX (pfam09693), PRK03918 (DNA double-strand break repair ATPase Rad50)

Seq: JAAINI010000090.1 Fusicatenibacter saccharivorans strain MSK.18.88 NODE_92_length_1879_cov_1151.54, whole genome shotgun sequence (1879 bp)
Overview 1 RT 1: 92-1685 bp Neighborhood of RT #1 [92, 1685] RVT-GII Feature: gene Location: 92-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47-103 7 bp Feature: gene Location: 1440-1685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAINI010000009.1 Fusicatenibacter saccharivorans strain MSK.18.88 NODE_9_length_123622_cov_304.971, whole genome shotgun sequence (123622 bp)
Overview 1 RT 1: 120326-123620 bp Neighborhood of RT #1 [120326, 123620] PRK10371 AraC RVT-GII GIIM Feature: gene Location: 120326-121249 bp Feature: domain Description: PRK10371 Location: 120455-120620 bp Feature: domain Description: PRK10371 Location: 1204 55-120620 bp Feature: domain Description: AraC Location: 120914-121208 bp Feature: domain Description: AraC Location: 120914 -121208 bp Feature: gene Location: 121586-121744 bp Feature: gene Location: 121746-123023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121959-122577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121959-122577 bp Feature: domain Description: GIIM Note: maturase Location: 122640-122862 bp Feature: domain Description: GIIM Note: maturase Location: 12264 0-122862 bp Feature: gene Location: 123217-123366 bp Feature: gene Location: 123459-123620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10371 (transcriptional regulator MelR), AraC (COG2207), RVT-GII, GIIM (pfam08388)