myRT

myRT report for GCA_013301005.1_ASM1330100v1

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Seq: JAAINR010000106.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_107_length_1205_cov_592.076, whole genome shotgun sequence (1205 bp)
Overview 1 RT 1: 495-1200 bp Neighborhood of RT #1 [495, 1202] RVT-GII Feature: gene Location: 495-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1 200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAINR010000011.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_11_length_97776_cov_177.585, whole genome shotgun sequence (97776 bp)
Overview 1 RT 1: 7720-11448 bp Neighborhood of RT #1 [7720, 11462] xerC INT_RitC_C_like RVT-GII AAA-ATPase_like PDDEXK_9 Feature: gene Location: 7720-8211 bp Feature: domain Description: xerC Location: 7738-8209 bp Feature: domain Description: xerC Location: 7738-82 09 bp Feature: gene Location: 8302-8733 bp Feature: domain Description: INT_RitC_C_like Location: 8308-8647 bp Feature: domain Description: INT_RitC_C_like Location: 8308-8647 bp Feature: gene Location: 8780-9544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9095-9476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9095-9476 bp Feature: gene Location: 9747-10007 bp Feature: gene Location: 10020-11462 bp Feature: domain Description: AAA-ATPase_like Location: 10026-10671 bp Feature: domain Description: AAA-ATPase_like Location: 1002 6-10671 bp Feature: domain Description: PDDEXK_9 Location: 11148-11448 bp Feature: domain Description: PDDEXK_9 Location: 11148-11448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), xerC (PRK01287), INT_RitC_C_like (cd01182), RVT-GII

Seq: JAAINR010000120.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_123_length_708_cov_407.034, whole genome shotgun sequence (708 bp)
Overview 1 RT 1: 254-692 bp Neighborhood of RT #1 [254, 706] RVT-GII Feature: gene Location: 254-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAINR010000013.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_13_length_91012_cov_238.125, whole genome shotgun sequence (91012 bp)
Overview 1 RT 1: 51166-55984 bp Neighborhood of RT #1 [51166, 55992] repA HTH_LUXR TraG_VirD4 RVT_N RVT-GII RVT-GII GIIM TraG-D_C TnpV Feature: gene Location: 51166-51738 bp Feature: domain Description: repA Location: 51181-51376 bp Feature: domain Description: repA Location: 51181-51376 bp Feature: domain Description: HTH_LUXR Location: 51538-51676 bp Feature: domain Description: HTH_LUXR Location: 51538-51676 bp Feature: gene Location: 51924-52262 bp Feature: domain Description: TraG_VirD4 Location: 51969-52146 bp Feature: domain Description: TraG_VirD4 Location: 51969-5214 6 bp Feature: gene Location: 52845-53636 bp Feature: RT Description: RVT_N Location: 52890-53133 bp Feature: RT Description: RVT_N Location: 52890-53133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53178-53493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53178-534 93 bp Feature: gene Location: 53452-54510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53455-53830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534 55-53830 bp Feature: domain Description: GIIM Note: maturase Location: 53881-54115 bp Feature: domain Description: GIIM Note: maturase Location: 53881-54 115 bp Feature: gene Location: 54654-55562 bp Feature: domain Description: TraG-D_C Location: 55194-55482 bp Feature: domain Description: TraG-D_C Location: 55194 -554 82 bp Feature: gene Location: 55615-55992 bp Feature: domain Description: TnpV Location: 55660-55984 bp Feature: domain Description: TnpV Location: 55660-55984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT repA, HTH_LUXR (smart00421), TraG_VirD4, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), TnpV (pfam14198)

Seq: JAAINR010000064.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_65_length_3933_cov_112.175, whole genome shotgun sequence (3933 bp)
Overview 1 RT 1: 123-3458 bp Neighborhood of RT #1 [123, 3511] HTH_XRE RVT-GII VanZ Feature: gene Location: 123-956 bp Feature: domain Description: HTH_XRE Location: 177-348 bp Feature: domain Description: HTH_XRE Location: 177-348 bp Feature: gene Location: 1132-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387-2077 bp Feature: gene Location: 2517-2762 bp Feature: gene Location: 2918-3511 bp Feature: domain Description: VanZ Location: 2966-3458 bp Feature: domain Description: VanZ Location: 2966-345 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_XRE (smart00530), VanZ (pfam04892)

Seq: JAAINR010000085.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_86_length_2111_cov_148.613, whole genome shotgun sequence (2111 bp)
Overview 1 RT 1: 270-2101 bp Neighborhood of RT #1 [270, 2109] RVT-GII IS285 Feature: gene Location: 270-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588-6 48 bp Feature: gene Location: 844-2109 bp Feature: domain Description: IS285 Location: 940-2101 bp Feature: domain Description: IS285 Location: 940-2101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328)

Seq: JAAINR010000091.1 Fusicatenibacter saccharivorans strain MSK.22.62 NODE_92_length_1692_cov_203.783, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 3-826 bp Neighborhood of RT #1 [3, 1140] RVT-GII MFS Feature: gene Location: 3-275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: gene Location: 309-491 bp Feature: gene Location: 577-1140 bp Feature: domain Description: MFS Location: 592-826 bp Feature: domain Description: MFS Location: 592-826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MFS (cl28910)