myRT

myRT report for GCA_013301035.1_ASM1330103v1

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Seq: JAAIUF010000010.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_10_length_121983_cov_145.557, whole genome shotgun sequence (121983 bp)
Overview 1 RT 1: 110522-114262 bp Neighborhood of RT #1 [110522, 114264] AAA-ATPase_like PDDEXK_9 RVT-GII INT_RitC_C_like xerC Feature: gene Location: 110522-111964 bp Feature: domain Description: AAA-ATPase_like Location: 110528-111173 bp Feature: domain Description: AAA-ATPase_like Location: 1 1 0528-1 1 1 1 73 bp Feature: domain Description: PDDEXK_9 Location: 111650-111950 bp Feature: domain Description: PDDEXK_9 Location: 1 1 1 650-1 1 1 950 bp Feature: gene Location: 112186-112437 bp Feature: gene Location: 112440-113204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112755-113136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2755-1 1 31 36 bp Feature: gene Location: 113251-113682 bp Feature: domain Description: INT_RitC_C_like Location: 113257-113596 bp Feature: domain Description: INT_RitC_C_like Location: 1 1 3257-1 1 3596 bp Feature: gene Location: 113773-114264 bp Feature: domain Description: xerC Location: 113791-114262 bp Feature: domain Description: xerC Location: 1 1 3791 -1 1 4262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, INT_RitC_C_like (cd01182), xerC (PRK01287)

Seq: JAAIUF010000015.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_15_length_91012_cov_179.236, whole genome shotgun sequence (91012 bp)
Overview 1 RT 1: 51166-55984 bp Neighborhood of RT #1 [51166, 55992] repA HTH_LUXR TraG_VirD4 RVT_N RVT-GII RVT-GII GIIM TraG-D_C TnpV Feature: gene Location: 51166-51738 bp Feature: domain Description: repA Location: 51181-51376 bp Feature: domain Description: repA Location: 51181-51376 bp Feature: domain Description: HTH_LUXR Location: 51538-51676 bp Feature: domain Description: HTH_LUXR Location: 51538-51676 bp Feature: gene Location: 51924-52262 bp Feature: domain Description: TraG_VirD4 Location: 51969-52146 bp Feature: domain Description: TraG_VirD4 Location: 51969-52 146 bp Feature: gene Location: 52845-53636 bp Feature: RT Description: RVT_N Location: 52890-53133 bp Feature: RT Description: RVT_N Location: 52 890-53133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53178-53493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53178-53493 bp Feature: gene Location: 53452-54510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53455-53830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53455-53830 bp Feature: domain Description: GIIM Note: maturase Location: 53881-54115 bp Feature: domain Description: GIIM Note: maturase Location: 53881-54115 bp Feature: gene Location: 54654-55562 bp Feature: domain Description: TraG-D_C Location: 55194-55482 bp Feature: domain Description: TraG-D_C Location: 55194-55482 bp Feature: gene Location: 55615-55992 bp Feature: domain Description: TnpV Location: 55660-55984 bp Feature: domain Description: TnpV Location: 55660-55984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT repA, HTH_LUXR (smart00421), TraG_VirD4, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), TnpV (pfam14198)

Seq: JAAIUF010000020.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_20_length_73292_cov_137.179, whole genome shotgun sequence (73292 bp)
Overview 1 RT 1: 70642-73130 bp Neighborhood of RT #1 [70642, 73291] COG2768 HAD_BPGM-like RVT-GII GIIM Feature: gene Location: 70642-71766 bp Feature: domain Description: COG2768 Location: 70657-71758 bp Feature: domain Description: COG2768 Location: 70657-71758 bp Feature: gene Location: 71941-72627 bp Feature: domain Description: HAD_BPGM-like Location: 71959-72553 bp Feature: domain Description: HAD_BPGM-like Location: 71959-72553 bp Feature: gene Location: 72722-73291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72728-72845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72728-72845 bp Feature: domain Description: GIIM Note: maturase Location: 72908-73130 bp Feature: domain Description: GIIM Note: maturase Location: 72908-73 13 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2768 (Uncharacterized Fe-S cluster protein ), HAD_BPGM-like (cd16423), RVT-GII, GIIM (pfam08388)

Seq: JAAIUF010000039.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_39_length_14236_cov_171.339, whole genome shotgun sequence (14236 bp)
Overview 1 RT 1: 237-4738 bp Neighborhood of RT #1 [237, 4770] RVT-GII IS285 pfam13191 TPR Feature: gene Location: 237-689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-615 bp Feature: gene Location: 920-2161 bp Feature: domain Description: IS285 Location: 992-2153 bp Feature: domain Description: IS285 Location: 992-2153 bp Feature: gene Location: 2413-4770 bp Feature: domain Description: pfam13191 Location: 2920-3073 bp Feature: domain Description: pfam13191 Location: 2920-3073 bp Feature: domain Description: TPR Location: 4054-4738 bp Feature: domain Description: TPR Location: 4 054 -4 738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, pfam13191 (AAA_16;AAA ATPase domain), TPR (smart00028), IS285 (COG3328)

Seq: JAAIUF010000053.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_54_length_3934_cov_184.99, whole genome shotgun sequence (3934 bp)
Overview 1 RT 1: 91-3459 bp Neighborhood of RT #1 [91, 3512] HTH_XRE RVT-GII VanZ Feature: gene Location: 91-957 bp Feature: domain Description: HTH_XRE Location: 178-349 bp Feature: domain Description: HTH_XRE Location: 178-349 bp Feature: gene Location: 1133-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-2078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-2078 bp Feature: gene Location: 2518-2763 bp Feature: gene Location: 2919-3512 bp Feature: domain Description: VanZ Location: 2967-3459 bp Feature: domain Description: VanZ Location: 2967-345 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VanZ (pfam04892), HTH_XRE (smart00530)

Seq: JAAIUF010000072.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_73_length_1692_cov_223.811, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 3-826 bp Neighborhood of RT #1 [3, 1140] RVT-GII MFS Feature: gene Location: 3-275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 -237 bp Feature: gene Location: 309-491 bp Feature: gene Location: 577-1140 bp Feature: domain Description: MFS Location: 592-826 bp Feature: domain Description: MFS Location: 592-826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MFS (cl28910)

Seq: JAAIUF010000083.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_84_length_1256_cov_1242.34, whole genome shotgun sequence (1256 bp)
Overview 1 RT 1: 495-1251 bp Neighborhood of RT #1 [495, 1253] RVT-GII Feature: gene Location: 495-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 08-1251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIUF010000094.1 Fusicatenibacter saccharivorans strain MSK.22.50 NODE_95_length_708_cov_424.593, whole genome shotgun sequence (708 bp)
Overview 1 RT 1: 254-692 bp Neighborhood of RT #1 [254, 706] RVT-GII Feature: gene Location: 254-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII