myRT

myRT report for GCA_013301065.1_ASM1330106v1

Download annotations/find similar RTs

Seq: JAAINV010000010.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_10_length_121984_cov_168.904, whole genome shotgun sequence (121984 bp)
Overview 1 RT 1: 110523-114263 bp Neighborhood of RT #1 [110523, 114265] AAA-ATPase_like PDDEXK_9 RVT-GII INT_RitC_C_like xerC Feature: gene Location: 110523-111965 bp Feature: domain Description: AAA-ATPase_like Location: 110529-111174 bp Feature: domain Description: AAA-ATPase_like Location: 1 1 0529-1 1 1 1 74 bp Feature: domain Description: PDDEXK_9 Location: 111651-111951 bp Feature: domain Description: PDDEXK_9 Location: 1 1 1 651 -1 1 1 951 bp Feature: gene Location: 112187-112438 bp Feature: gene Location: 112441-113205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112756-113137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2756-1 1 31 37 bp Feature: gene Location: 113252-113683 bp Feature: domain Description: INT_RitC_C_like Location: 113258-113597 bp Feature: domain Description: INT_RitC_C_like Location: 1 1 3258-1 1 3597 bp Feature: gene Location: 113774-114265 bp Feature: domain Description: xerC Location: 113792-114263 bp Feature: domain Description: xerC Location: 1 1 3792-1 1 4263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, INT_RitC_C_like (cd01182), xerC (PRK01287)

Seq: JAAINV010000014.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_14_length_91013_cov_199.649, whole genome shotgun sequence (91013 bp)
Overview 1 RT 1: 51166-55984 bp Neighborhood of RT #1 [51166, 55992] repA HTH_LUXR TraG_VirD4 RVT_N RVT-GII RVT-GII GIIM TraG-D_C TnpV Feature: gene Location: 51166-51738 bp Feature: domain Description: repA Location: 51181-51376 bp Feature: domain Description: repA Location: 51181-51376 bp Feature: domain Description: HTH_LUXR Location: 51538-51676 bp Feature: domain Description: HTH_LUXR Location: 51538-51676 bp Feature: gene Location: 51924-52262 bp Feature: domain Description: TraG_VirD4 Location: 51969-52146 bp Feature: domain Description: TraG_VirD4 Location: 51969-52 146 bp Feature: gene Location: 52845-53636 bp Feature: RT Description: RVT_N Location: 52890-53133 bp Feature: RT Description: RVT_N Location: 52 890-53133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53178-53493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53178-53493 bp Feature: gene Location: 53452-54510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53455-53830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53455-53830 bp Feature: domain Description: GIIM Note: maturase Location: 53881-54115 bp Feature: domain Description: GIIM Note: maturase Location: 53881-54115 bp Feature: gene Location: 54654-55562 bp Feature: domain Description: TraG-D_C Location: 55194-55482 bp Feature: domain Description: TraG-D_C Location: 55194-55482 bp Feature: gene Location: 55615-55992 bp Feature: domain Description: TnpV Location: 55660-55984 bp Feature: domain Description: TnpV Location: 55660-55984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT repA, HTH_LUXR (smart00421), TraG_VirD4, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), TnpV (pfam14198)

Seq: JAAINV010000038.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_38_length_14160_cov_193.496, whole genome shotgun sequence (14160 bp)
Overview 1 RT 1: 9467-13817 bp Neighborhood of RT #1 [9467, 13891] pfam13191 TPR IS285 RVT-GII Feature: gene Location: 9467-11824 bp Feature: domain Description: pfam13191 Location: 9974-10127 bp Feature: domain Description: pfam13 191 Location: 9974-10127 bp Feature: domain Description: TPR Location: 11108-11792 bp Feature: domain Description: TPR Location: 11108-11792 bp Feature: gene Location: 12076-13317 bp Feature: domain Description: IS285 Location: 12148-13309 bp Feature: domain Description: IS285 Location: 12148-13 3 09 bp Feature: gene Location: 13439-13891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13757-13817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 757-13 817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, pfam13191 (AAA_16;AAA ATPase domain), TPR (smart00028)

Seq: JAAINV010000054.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_55_length_3934_cov_194.168, whole genome shotgun sequence (3934 bp)
Overview 1 RT 1: 91-3459 bp Neighborhood of RT #1 [91, 3512] HTH_XRE RVT-GII VanZ Feature: gene Location: 91-957 bp Feature: domain Description: HTH_XRE Location: 178-349 bp Feature: domain Description: HTH_XRE Location: 178-34 9 bp Feature: gene Location: 1133-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-2078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-2078 bp Feature: gene Location: 2518-2763 bp Feature: gene Location: 2919-3512 bp Feature: domain Description: VanZ Location: 2967-3459 bp Feature: domain Description: VanZ Location: 2967-34 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VanZ (pfam04892), HTH_XRE (smart00530)

Seq: JAAINV010000074.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_75_length_1694_cov_250.508, whole genome shotgun sequence (1694 bp)
Overview 1 RT 1: 3-826 bp Neighborhood of RT #1 [3, 1140] RVT-GII MFS Feature: gene Location: 3-275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-237 bp Feature: gene Location: 309-491 bp Feature: gene Location: 577-1140 bp Feature: domain Description: MFS Location: 592-826 bp Feature: domain Description: MFS Location: 5 92-826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MFS (cl28910)

Seq: JAAINV010000082.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_83_length_1205_cov_1310.29, whole genome shotgun sequence (1205 bp)
Overview 1 RT 1: 495-1200 bp Neighborhood of RT #1 [495, 1202] RVT-GII Feature: gene Location: 495-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAINV010000096.1 Fusicatenibacter saccharivorans strain MSK.22.31 NODE_97_length_708_cov_480.51, whole genome shotgun sequence (708 bp)
Overview 1 RT 1: 254-692 bp Neighborhood of RT #1 [254, 706] RVT-GII Feature: gene Location: 254-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII