myRT

myRT report for GCA_013301105.1_ASM1330110v1

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Seq: JAAITQ010000112.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_113_length_1125_cov_913.656, whole genome shotgun sequence (1125 bp)
Overview 1 RT 1: 2-1123 bp Neighborhood of RT #1 [2, 1123] RVT-GII Feature: gene Location: 2-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215-632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 5-632 bp Feature: gene Location: 971-1123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAITQ010000032.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_32_length_34129_cov_160.515, whole genome shotgun sequence (34129 bp)
Overview 1 RT 1: 3969-7969 bp Neighborhood of RT #1 [3969, 7983] HTH_16 sigma70-ECF RVT-GII GIIM RlmN Feature: gene Location: 3969-4199 bp Feature: domain Description: HTH_16 Location: 4011-4188 bp Feature: domain Description: HTH_16 Location: 4011-4188 bp Feature: gene Location: 4183-4620 bp Feature: domain Description: sigma70-ECF Location: 4333-4591 bp Feature: domain Description: sigma70-ECF Location: 4333-4591 bp Feature: gene Location: 4817-6211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5135-5759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5135-5759 bp Feature: domain Description: GIIM Note: maturase Location: 5816-6026 bp Feature: domain Description: GIIM Note: maturase Location: 5816-602 6 bp Feature: gene Location: 6563-6775 bp Feature: gene Location: 7000-7983 bp Feature: domain Description: RlmN Location: 7144-7969 bp Feature: domain Description: RlmN Location: 7144-7969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_16 (pfam12645), sigma70-ECF (TIGR02937), RVT-GII, GIIM (pfam08388), RlmN (COG0820)

Seq: JAAITQ010000003.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_3_length_172343_cov_156.67, whole genome shotgun sequence (172343 bp)
Overview 1 RT 1: 16061-22283 bp Neighborhood of RT #1 [16061, 22297] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII TraG_VirD4 DUF3801 Feature: gene Location: 16061-17941 bp Feature: domain Description: SR_TndX_transposase Location: 16085-16493 bp Feature: domain Description: SR_TndX_transposase Location: 16085-16493 bp Feature: domain Description: Recombinase Location: 16592-16955 bp Feature: domain Description: Recombinase Location: 16592-16955 bp Feature: domain Description: Zn_ribbon_recom Location: 16997-17180 bp Feature: domain Description: Zn_ribbon_recom Location: 16997-17180 bp Feature: domain Description: DUF4368 Location: 17465-17651 bp Feature: domain Description: DUF43 68 Location: 17465-17651 bp Feature: gene Location: 18014-18247 bp Feature: gene Location: 18389-20299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18719-19463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18719-19463 bp Feature: gene Location: 20925-21794 bp Feature: domain Description: TraG_VirD4 Location: 21354-21729 bp Feature: domain Description: TraG_VirD4 Location: 213 54-21729 bp Feature: gene Location: 21791-22297 bp Feature: domain Description: DUF3801 Location: 21866-22283 bp Feature: domain Description: DUF3 801 Location: 21866-22283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, TraG_VirD4, DUF3801 (pfam12687)

Seq: JAAITQ010000068.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_68_length_7169_cov_133.329, whole genome shotgun sequence (7169 bp)
Overview 1 RT 1: 418-3657 bp Neighborhood of RT #1 [418, 4058] YkfC RVT-GII PRK10572 PRK10572 LacZ Feature: gene Location: 418-723 bp Feature: gene Location: 740-1231 bp Feature: domain Description: YkfC Location: 881-1016 bp Feature: domain Description: YkfC Location: 881-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1223 bp Feature: gene Location: 1351-2193 bp Feature: domain Description: PRK10572 Location: 1507-1642 bp Feature: domain Description: PRK10572 Location: 1507-164 2 bp Feature: domain Description: PRK10572 Location: 1843-2167 bp Feature: domain Description: PRK10572 Location: 184 3-2167 bp Feature: gene Location: 2340-4058 bp Feature: domain Description: LacZ Location: 2391-3657 bp Feature: domain Description: LacZ Location: 2391-3657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PRK10572 (arabinose operon transcriptional regulator AraC), LacZ (COG3250)

Seq: JAAITQ010000076.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_77_length_5055_cov_133.859, whole genome shotgun sequence (5055 bp)
Overview 1 RT 1: 464-4370 bp Neighborhood of RT #1 [464, 4370] MobA_MobL DUF3847 RVT-GII Feature: gene Location: 464-1960 bp Feature: domain Description: MobA_MobL Location: 515-1202 bp Feature: domain Description: MobA_MobL Location: 5 15 -1202 bp Feature: gene Location: 1926-2270 bp Feature: domain Description: DUF3847 Location: 1959-2178 bp Feature: domain Description: DUF3847 Location: 195 9-2178 bp Feature: gene Location: 2476-3771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2731-3421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2731-3421 bp Feature: gene Location: 3824-4069 bp Feature: gene Location: 4200-4370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobA_MobL (pfam03389), DUF3847 (pfam12958), RVT-GII

Seq: JAAITQ010000007.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_7_length_138403_cov_207.246, whole genome shotgun sequence (138403 bp)
Overview 1 RT 1: 135384-138239 bp Neighborhood of RT #1 [135384, 138400] AtuA RocR HTH_8 RVT-GII GIIM Feature: gene Location: 135384-136736 bp Feature: domain Description: AtuA Location: 135402-136470 bp Feature: domain Description: AtuA Location: 135402-136 470 bp Feature: gene Location: 136932-137414 bp Feature: domain Description: RocR Location: 136941-137259 bp Feature: domain Description: RocR Location: 136 941-137259 bp Feature: domain Description: HTH_8 Location: 137292-137412 bp Feature: domain Description: HTH_8 Location: 137292-137412 bp Feature: gene Location: 137702-138400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137705-137951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137705-137951 bp Feature: domain Description: GIIM Note: maturase Location: 138017-138239 bp Feature: domain Description: GIIM Note: maturase Location: 138017-138239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtuA (pfam07287), RocR (COG3829), HTH_8 (pfam02954), RVT-GII, GIIM (pfam08388)

Seq: JAAITQ010000084.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_85_length_2512_cov_333.026, whole genome shotgun sequence (2512 bp)
Overview 1 RT 1: 571-2065 bp Neighborhood of RT #1 [571, 2403] RVT-GII Intron_maturas2 Feature: gene Location: 571-2403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-1684 bp Feature: domain Description: Intron_maturas2 Location: 1762-2065 bp Feature: domain Description: Intron_maturas2 Location: 17 62-2065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: JAAITQ010000009.1 Fusicatenibacter saccharivorans strain MSK.14.54 NODE_9_length_121521_cov_190.584, whole genome shotgun sequence (121521 bp)
Overview 1 RT 1: 103700-109679 bp Neighborhood of RT #1 [103700, 109804] BaeS RVT-GII GIIM AAAA PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 103700-103882 bp Feature: gene Location: 103688-104860 bp Feature: domain Description: BaeS Location: 103955-104852 bp Feature: domain Description: BaeS Location: 103955-1048 52 bp Feature: gene Location: 105383-105946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105389-105590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10538 9-105590 bp Feature: domain Description: GIIM Note: maturase Location: 105650-105875 bp Feature: domain Description: GIIM Note: maturase Location: 105650-1058 75 bp Feature: gene Location: 106174-107571 bp Feature: domain Description: AAAA Location: 106183-107401 bp Feature: domain Description: AAAA Location: 10618 3-107401 bp Feature: gene Location: 107831-109804 bp Feature: domain Description: PHA02517 Location: 107846-108629 bp Feature: domain Description: PHA02517 Location: 1078 46-108 629 bp Feature: domain Description: DDE_Tnp_IS66 Location: 108698-109532 bp Feature: domain Description: DDE_Tnp_IS66 Location: 108 698 -109532 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 109556-109679 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 109556-109679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), RVT-GII, GIIM (pfam08388), AAAA (COG1672), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)