myRT

myRT report for GCA_013301175.1_ASM1330117v1

Download annotations/find similar RTs

Seq: JAAWUX010000118.1 Faecalicatena fissicatena strain MSK.14.47 NODE_119_length_836_cov_2310.22, whole genome shotgun sequence (836 bp)
Overview 1 RT 1: 3-831 bp Neighborhood of RT #1 [3, 833] RVT-GII Feature: gene Location: 3-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 -831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAWUX010000123.1 Faecalicatena fissicatena strain MSK.14.47 NODE_124_length_688_cov_2369.83, whole genome shotgun sequence (688 bp)
Overview 1 RT 1: 73-511 bp Neighborhood of RT #1 [73, 687] RVT-GII GIIM Feature: gene Location: 73-687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-2 35 bp Feature: domain Description: GIIM Note: maturase Location: 292-511 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 -511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAWUX010000019.1 Faecalicatena fissicatena strain MSK.14.47 NODE_19_length_51066_cov_175.611, whole genome shotgun sequence (51066 bp)
Overview 1 RT 1: 40671-44112 bp Neighborhood of RT #1 [40671, 44112] LytT HTH_3 RVT-GII GIIM Feature: gene Location: 40671-41399 bp Feature: domain Description: LytT Location: 40674-41295 bp Feature: domain Description: LytT Location: 40674-41295 bp Feature: gene Location: 41377-41757 bp Feature: domain Description: HTH_3 Location: 41392-41554 bp Feature: domain Description: HTH_3 Location: 413 92-41554 bp Feature: gene Location: 41934-43238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42135-42753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4213 5-42753 bp Feature: domain Description: GIIM Note: maturase Location: 42807-43023 bp Feature: domain Description: GIIM Note: maturase Location: 42807-43 023 bp Feature: gene Location: 43593-43730 bp Feature: gene Location: 43822-44112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), HTH_3 (pfam01381), RVT-GII, GIIM (pfam08388)

Seq: JAAWUX010000030.1 Faecalicatena fissicatena strain MSK.14.47 NODE_30_length_37769_cov_294.018, whole genome shotgun sequence (37769 bp)
Overview 1 RT 1: 3-2621 bp Neighborhood of RT #1 [3, 2815] RVT-GII GIIM TfoX STE14 Feature: gene Location: 3-317 bp Feature: gene Location: 321-494 bp Feature: gene Location: 545-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800-14 93 bp Feature: domain Description: GIIM Note: maturase Location: 1553-1772 bp Feature: domain Description: GIIM Note: maturase Location: 1553-1772 bp Feature: gene Location: 1949-2269 bp Feature: domain Description: TfoX Location: 1952-2180 bp Feature: domain Description: TfoX Location: 1952-2180 bp Feature: gene Location: 2450-2815 bp Feature: domain Description: STE14 Location: 2462-2621 bp Feature: domain Description: STE14 Location: 24 62-2621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TfoX (COG3070), STE14 (COG2020)

Seq: JAAWUX010000071.1 Faecalicatena fissicatena strain MSK.14.47 NODE_71_length_13391_cov_333.032, whole genome shotgun sequence (13391 bp)
Overview 1 RT 1: 10572-13342 bp Neighborhood of RT #1 [10572, 13386] Acetyltransf_1 RVT-GII PRK10562 Feature: gene Location: 10572-11093 bp Feature: domain Description: Acetyltransf_1 Location: 10698-11013 bp Feature: domain Description: Acetyltransf_1 Location: 10698-11013 bp Feature: gene Location: 11256-11477 bp Feature: gene Location: 11591-12886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11846-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11846-125 36 bp Feature: gene Location: 13018-13386 bp Feature: domain Description: PRK10562 Location: 13021-13342 bp Feature: domain Description: PRK105 62 Location: 13021-13342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII, PRK10562 (putative acetyltransferase; Provisional)

Seq: JAAWUX010000078.1 Faecalicatena fissicatena strain MSK.14.47 NODE_78_length_10110_cov_307.94, whole genome shotgun sequence (10110 bp)
Overview 1 RT 1: 112-3492 bp Neighborhood of RT #1 [112, 3509] BaeS RVT-GII rSAM_mob_pairB rSAM_mob_pairA Feature: gene Location: 112-555 bp Feature: gene Location: 559-1467 bp Feature: domain Description: BaeS Location: 577-1408 bp Feature: domain Description: BaeS Location: 577-1408 bp Feature: gene Location: 1623-1802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 53-1722 bp Feature: gene Location: 1924-2832 bp Feature: domain Description: rSAM_mob_pairB Location: 1954-2806 bp Feature: domain Description: rSAM_mob_pairB Location: 1954-2806 bp Feature: gene Location: 2826-3509 bp Feature: domain Description: rSAM_mob_pairA Location: 2835-3492 bp Feature: domain Description: rSAM_mob_pairA Location: 2835-3492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), RVT-GII, rSAM_mob_pairB (TIGR04470), rSAM_mob_pairA (TIGR04471)

Seq: JAAWUX010000096.1 Faecalicatena fissicatena strain MSK.14.47 NODE_97_length_3680_cov_310.58, whole genome shotgun sequence (3680 bp)
Overview 1 RT 1: 573-3241 bp Neighborhood of RT #1 [573, 3241] ManC RVT-GII Feature: gene Location: 573-1031 bp Feature: domain Description: ManC Location: 801-996 bp Feature: domain Description: ManC Location: 801-996 bp Feature: gene Location: 1138-1284 bp Feature: gene Location: 1394-2689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649-2339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649-2339 bp Feature: gene Location: 2742-2987 bp Feature: gene Location: 3062-3241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManC (COG0662), RVT-GII