myRT

myRT report for GCA_013301225.1_ASM1330122v1

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Seq: JAAWUZ010000099.1 Faecalicatena fissicatena strain MSK.14.16 NODE_100_length_3666_cov_345.873, whole genome shotgun sequence (3666 bp)
Overview 1 RT 1: 559-3227 bp Neighborhood of RT #1 [559, 3227] ManC RVT-GII Feature: gene Location: 559-1017 bp Feature: domain Description: ManC Location: 787-982 bp Feature: domain Description: ManC Location: 787-982 bp Feature: gene Location: 1124-1270 bp Feature: gene Location: 1380-2675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635-2325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 635-2325 bp Feature: gene Location: 2728-2973 bp Feature: gene Location: 3048-3227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManC (COG0662), RVT-GII

Seq: JAAWUZ010000116.1 Faecalicatena fissicatena strain MSK.14.16 NODE_118_length_1236_cov_2522.61, whole genome shotgun sequence (1236 bp)
Overview 1 RT 1: 1-1162 bp Neighborhood of RT #1 [1, 1233] RVT-GII GIIM Feature: gene Location: 1-1233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 -886 bp Feature: domain Description: GIIM Note: maturase Location: 943-1162 bp Feature: domain Description: GIIM Note: maturase Location: 943-1162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAWUZ010000030.1 Faecalicatena fissicatena strain MSK.14.16 NODE_30_length_37770_cov_317.339, whole genome shotgun sequence (37770 bp)
Overview 1 RT 1: 3-2621 bp Neighborhood of RT #1 [3, 2815] RVT-GII GIIM TfoX STE14 Feature: gene Location: 3-317 bp Feature: gene Location: 321-494 bp Feature: gene Location: 545-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800-1493 bp Feature: domain Description: GIIM Note: maturase Location: 1553-1772 bp Feature: domain Description: GIIM Note: maturase Location: 1553 -1772 bp Feature: gene Location: 1949-2269 bp Feature: domain Description: TfoX Location: 1952-2180 bp Feature: domain Description: TfoX Location: 1952-2180 bp Feature: gene Location: 2450-2815 bp Feature: domain Description: STE14 Location: 2462-2621 bp Feature: domain Description: STE14 Location: 2462-2621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TfoX (COG3070), STE14 (COG2020)

Seq: JAAWUZ010000041.1 Faecalicatena fissicatena strain MSK.14.16 NODE_41_length_29882_cov_173.568, whole genome shotgun sequence (29882 bp)
Overview 1 RT 1: 19487-22928 bp Neighborhood of RT #1 [19487, 22928] LytT HTH_3 RVT-GII GIIM Feature: gene Location: 19487-20215 bp Feature: domain Description: LytT Location: 19490-20111 bp Feature: domain Description: LytT Location: 194 90-20111 bp Feature: gene Location: 20193-20573 bp Feature: domain Description: HTH_3 Location: 20208-20370 bp Feature: domain Description: HTH_3 Location: 20208-20370 bp Feature: gene Location: 20750-22054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20951-21569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20951-21569 bp Feature: domain Description: GIIM Note: maturase Location: 21623-21839 bp Feature: domain Description: GIIM Note: maturase Location: 21623-21839 bp Feature: gene Location: 22409-22546 bp Feature: gene Location: 22638-22928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), HTH_3 (pfam01381), RVT-GII, GIIM (pfam08388)

Seq: JAAWUZ010000073.1 Faecalicatena fissicatena strain MSK.14.16 NODE_73_length_13391_cov_377.539, whole genome shotgun sequence (13391 bp)
Overview 1 RT 1: 10572-13342 bp Neighborhood of RT #1 [10572, 13386] Acetyltransf_1 RVT-GII PRK10562 Feature: gene Location: 10572-11093 bp Feature: domain Description: Acetyltransf_1 Location: 10698-11013 bp Feature: domain Description: Acetyltransf_1 Location: 10698-11013 bp Feature: gene Location: 11256-11477 bp Feature: gene Location: 11591-12886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11846-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11846-125 36 bp Feature: gene Location: 13018-13386 bp Feature: domain Description: PRK10562 Location: 13021-13342 bp Feature: domain Description: PRK105 62 Location: 13021-13342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII, PRK10562 (putative acetyltransferase; Provisional)

Seq: JAAWUZ010000080.1 Faecalicatena fissicatena strain MSK.14.16 NODE_80_length_10110_cov_325.903, whole genome shotgun sequence (10110 bp)
Overview 1 RT 1: 112-3492 bp Neighborhood of RT #1 [112, 3509] BaeS RVT-GII rSAM_mob_pairB rSAM_mob_pairA Feature: gene Location: 112-555 bp Feature: gene Location: 559-1467 bp Feature: domain Description: BaeS Location: 577-1408 bp Feature: domain Description: BaeS Location: 577-1408 bp Feature: gene Location: 1623-1802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 53-1722 bp Feature: gene Location: 1924-2832 bp Feature: domain Description: rSAM_mob_pairB Location: 1954-2806 bp Feature: domain Description: rSAM_mob_pairB Location: 1954-2806 bp Feature: gene Location: 2826-3509 bp Feature: domain Description: rSAM_mob_pairA Location: 2835-3492 bp Feature: domain Description: rSAM_mob_pairA Location: 2835-3492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), RVT-GII, rSAM_mob_pairB (TIGR04470), rSAM_mob_pairA (TIGR04471)