myRT

myRT report for GCA_013301385.1_ASM1330138v1

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Seq: JAAIOF010000011.1 Dorea formicigenerans strain MSK.13.39 NODE_11_length_108052_cov_220.949, whole genome shotgun sequence (108052 bp)
Overview 1 RT 1: 79197-85026 bp 2 RT 2: 93502-96820 bp Neighborhood of RT #1 [79197, 85034] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TnpV Neighborhood of RT #2 [93502, 96825] Maff2 RVT-GII HNHc YozG Feature: gene Location: 79197-79703 bp Feature: gene Location: 79958-80224 bp Feature: gene Location: 80263-82080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80527-81346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80527-81 346 bp Feature: domain Description: Intron_maturas2 Location: 81418-81721 bp Feature: domain Description: Intron_maturas2 Location: 81 41 8-81 721 bp Feature: domain Description: HNHc Note: nucleases Location: 81901-82045 bp Feature: domain Description: HNHc Note: nucleases Location: 81 901 -82045 bp Feature: gene Location: 82171-84693 bp Feature: domain Description: T4SS-DNA_transf Location: 82342-82666 bp Feature: domain Description: T4SS-DNA_transf Location: 82342-82666 bp Feature: domain Description: SR_TndX_transposase Location: 82831-83260 bp Feature: domain Description: SR_TndX_transposase Location: 82831 -83260 bp Feature: domain Description: Recombinase Location: 83356-83716 bp Feature: domain Description: Recombinase Location: 83356-8371 6 bp Feature: domain Description: Zn_ribbon_recom Location: 83761-83947 bp Feature: domain Description: Zn_ribbon_recom Location: 83761 -83947 bp Feature: domain Description: DUF4368 Location: 84223-84418 bp Feature: domain Description: DUF4368 Location: 84223-8441 8 bp Feature: gene Location: 84690-85034 bp Feature: domain Description: TnpV Location: 84702-85026 bp Feature: domain Description: TnpV Location: 84702-85026 bp Feature: gene Location: 93502-93633 bp Feature: domain Description: Maff2 Location: 93505-93631 bp Feature: domain Description: Maff2 Location: 93505-93631 bp Feature: gene Location: 94107-94235 bp Feature: gene Location: 94364-96283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94736-95474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94736-95474 bp Feature: domain Description: HNHc Note: nucleases Location: 96017-96170 bp Feature: domain Description: HNHc Note: nucleases Location: 9601 7-961 70 bp Feature: gene Location: 96323-96475 bp Feature: gene Location: 96616-96825 bp Feature: domain Description: YozG Location: 96628-96820 bp Feature: domain Description: YozG Location: 96628-96820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), TnpV (pfam14198), Maff2 (pfam12750)
YozG (COG3655)

Seq: JAAIOF010000055.1 Dorea formicigenerans strain MSK.13.39 NODE_55_length_5505_cov_201.954, whole genome shotgun sequence (5505 bp)
Overview 1 RT 1: 3-5103 bp Neighborhood of RT #1 [3, 5504] AAA_10 RVT-GII AAA_10 TrbL Feature: gene Location: 3-257 bp Feature: domain Description: AAA_10 Location: 36-222 bp Feature: domain Description: AAA_10 Location: 36-2 2 2 bp Feature: gene Location: 954-2780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254-1953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 54-1953 bp Feature: gene Location: 2998-3837 bp Feature: domain Description: AAA_10 Location: 3001-3799 bp Feature: domain Description: AAA_10 Location: 3001-3799 bp Feature: gene Location: 3837-5504 bp Feature: domain Description: TrbL Location: 4743-5103 bp Feature: domain Description: TrbL Location: 4743-5103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), TrbL (pfam04610), RVT-GII

Seq: JAAIOF010000063.1 Dorea formicigenerans strain MSK.13.39 NODE_64_length_1867_cov_1281.28, whole genome shotgun sequence (1867 bp)
Overview 1 RT 1: 368-1608 bp Neighborhood of RT #1 [368, 1781] RVT-GII GIIM Feature: gene Location: 368-511 bp Feature: gene Location: 498-1781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-13 23 bp Feature: domain Description: GIIM Note: maturase Location: 1383-1608 bp Feature: domain Description: GIIM Note: maturase Location: 13 83 -1608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)