myRT

myRT report for GCA_013301545.1_ASM1330154v1

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Seq: JAAIOO010000013.1 Coprococcus comes strain MSK.11.50 NODE_13_length_70821_cov_290.424, whole genome shotgun sequence (70821 bp)
Overview 1 RT 1: 43616-48243 bp Neighborhood of RT #1 [43616, 48243] SMC_prok_B RVT-DGRs Feature: gene Location: 43616-43813 bp Feature: gene Location: 43816-46125 bp Feature: domain Description: SMC_prok_B Location: 43873-44557 bp Feature: domain Description: SMC_prok_B Location: 43873-44557 bp Feature: gene Location: 46559-47740 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46799-47462 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46799-47462 bp Feature: gene Location: 47688-48044 bp Feature: gene Location: 48094-48243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), RVT-DGRs

Seq: JAAIOO010000044.1 Coprococcus comes strain MSK.11.50 NODE_44_length_16699_cov_214.713, whole genome shotgun sequence (16699 bp)
Overview 1 RT 1: 5095-8316 bp Neighborhood of RT #1 [5095, 8330] RVT-GII MmcQ Feature: gene Location: 5095-5463 bp Feature: gene Location: 5456-6589 bp Feature: gene Location: 6757-7446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7012-7342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7012 -7342 bp Feature: gene Location: 7497-7670 bp Feature: gene Location: 7989-8330 bp Feature: domain Description: MmcQ Location: 7992-8316 bp Feature: domain Description: MmcQ Location: 7992 -8316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MmcQ (COG2315)

Seq: JAAIOO010000006.1 Coprococcus comes strain MSK.11.50 NODE_6_length_97527_cov_374.976, whole genome shotgun sequence (97527 bp)
Overview 1 RT 1: 4528-8826 bp 2 RT 2: 26247-29489 bp Neighborhood of RT #1 [4528, 8826] DUF3801 VirD4 RVT-GII Neighborhood of RT #2 [26247, 29527] Acetyltransf_1 RVT-GII PRK10562 ATC_hydrolase Feature: gene Location: 4528-5091 bp Feature: domain Description: DUF3801 Location: 4720-5071 bp Feature: domain Description: DUF3 801 Location: 4720-5071 bp Feature: gene Location: 5091-5915 bp Feature: domain Description: VirD4 Location: 5346-5853 bp Feature: domain Description: VirD4 Location: 53 46-5853 bp Feature: gene Location: 6541-8451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6871-7615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6871-7615 bp Feature: gene Location: 8475-8630 bp Feature: gene Location: 8662-8826 bp Feature: gene Location: 26247-26768 bp Feature: domain Description: Acetyltransf_1 Location: 26373-26688 bp Feature: domain Description: Acetyltransf_1 Location: 263 73 -26688 bp Feature: gene Location: 26931-27176 bp Feature: gene Location: 27266-28561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27521-28211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27521-28211 bp Feature: gene Location: 28693-29118 bp Feature: domain Description: PRK10562 Location: 28696-29113 bp Feature: domain Description: PRK10562 Location: 28696-29113 bp Feature: gene Location: 29213-29527 bp Feature: domain Description: ATC_hydrolase Location: 29276-29489 bp Feature: domain Description: ATC_hydrolase Location: 29276-29489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, Acetyltransf_1 (pfam00583), PRK10562 (putative acetyltransferase; Provisional), ATC_hydrolase (pfam14196)

Seq: JAAIOO010000070.1 Coprococcus comes strain MSK.11.50 NODE_71_length_2038_cov_818.23, whole genome shotgun sequence (2038 bp)
Overview 1 RT 1: 1-1893 bp Neighborhood of RT #1 [1, 2036] RVT_N RVT-GII GIIM Feature: gene Location: 1-237 bp Feature: gene Location: 627-2036 bp Feature: RT Description: RVT_N Location: 672-915 bp Feature: RT Description: RVT_N Location: 672-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960-1608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1893 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)