myRT

myRT report for GCA_013301565.1_ASM1330156v1

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Seq: JAAIOP010000014.1 Coprococcus comes strain MSK.11.23 NODE_14_length_73562_cov_328.666, whole genome shotgun sequence (73562 bp)
Overview 1 RT 1: 64131-67331 bp Neighborhood of RT #1 [64131, 67411] ATC_hydrolase PRK10562 RVT-GII Acetyltransf_1 Feature: gene Location: 64131-64445 bp Feature: domain Description: ATC_hydrolase Location: 64194-64407 bp Feature: domain Description: ATC_hydrolase Location: 641 94-64407 bp Feature: gene Location: 64540-64965 bp Feature: domain Description: PRK10562 Location: 64543-64960 bp Feature: domain Description: PRK1 0562 Location: 64543-64960 bp Feature: gene Location: 65097-66392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65352-66042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65352-66042 bp Feature: gene Location: 66445-66690 bp Feature: gene Location: 66890-67411 bp Feature: domain Description: Acetyltransf_1 Location: 67016-67331 bp Feature: domain Description: Acetyltransf_1 Location: 6701 6-67331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATC_hydrolase (pfam14196), PRK10562 (putative acetyltransferase; Provisional), RVT-GII, Acetyltransf_1 (pfam00583)

Seq: JAAIOP010000018.1 Coprococcus comes strain MSK.11.23 NODE_18_length_66837_cov_261.543, whole genome shotgun sequence (66837 bp)
Overview 1 RT 1: 22579-25438 bp Neighborhood of RT #1 [22579, 27006] RVT-DGRs SMC_prok_B Feature: gene Location: 22579-22728 bp Feature: gene Location: 22778-23134 bp Feature: gene Location: 23082-24263 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23322-23985 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 332 2 -2 3985 bp Feature: gene Location: 24262-24501 bp Feature: gene Location: 24697-27006 bp Feature: domain Description: SMC_prok_B Location: 24754-25438 bp Feature: domain Description: SMC_prok_B Location: 2 4754-2 5438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, SMC_prok_B (TIGR02168)

Seq: JAAIOP010000030.1 Coprococcus comes strain MSK.11.23 NODE_30_length_32271_cov_305.864, whole genome shotgun sequence (32271 bp)
Overview 1 RT 1: 27644-31864 bp Neighborhood of RT #1 [27644, 32268] YodL LPD16 DUF4316 LPD25 RVT-GII GIIM Feature: gene Location: 27644-30403 bp Feature: domain Description: YodL Location: 28424-28718 bp Feature: domain Description: YodL Location: 28424-28718 bp Feature: domain Description: LPD16 Location: 28748-28970 bp Feature: domain Description: LPD16 Location: 28748-28970 bp Feature: domain Description: DUF4316 Location: 29018-29102 bp Feature: domain Description: DUF43 16 Location: 29018-29102 bp Feature: domain Description: LPD25 Location: 29711-30008 bp Feature: domain Description: LPD25 Location: 29711-3 0008 bp Feature: gene Location: 30484-31479 bp Feature: gene Location: 31480-32268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31486-31579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1486-3 1579 bp Feature: domain Description: GIIM Note: maturase Location: 31633-31864 bp Feature: domain Description: GIIM Note: maturase Location: 3 163 3 -3 1864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), RVT-GII, GIIM (pfam08388)

Seq: JAAIOP010000037.1 Coprococcus comes strain MSK.11.23 NODE_37_length_25273_cov_209.304, whole genome shotgun sequence (25273 bp)
Overview 1 RT 1: 12334-15555 bp Neighborhood of RT #1 [12334, 15569] RVT-GII MmcQ Feature: gene Location: 12334-12702 bp Feature: gene Location: 12695-13828 bp Feature: gene Location: 13996-14685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14251-14581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 251-14 581 bp Feature: gene Location: 14736-14909 bp Feature: gene Location: 15228-15569 bp Feature: domain Description: MmcQ Location: 15231-15555 bp Feature: domain Description: MmcQ Location: 15231-15555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MmcQ (COG2315)

Seq: JAAIOP010000047.1 Coprococcus comes strain MSK.11.23 NODE_47_length_14967_cov_338.044, whole genome shotgun sequence (14967 bp)
Overview 1 RT 1: 4799-11032 bp Neighborhood of RT #1 [4799, 11052] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII VirD4 DUF3801 Feature: gene Location: 4799-6724 bp Feature: domain Description: SR_TndX_transposase Location: 4868-5276 bp Feature: domain Description: SR_TndX_transposase Location: 4868-5 276 bp Feature: domain Description: Recombinase Location: 5375-5738 bp Feature: domain Description: Recombinase Location: 5 375 -5 738 bp Feature: domain Description: Zn_ribbon_recom Location: 5780-5963 bp Feature: domain Description: Zn_ribbon_recom Location: 5 780-5 963 bp Feature: domain Description: DUF4368 Location: 6248-6434 bp Feature: domain Description: DUF4368 Location: 6248-6434 bp Feature: gene Location: 6754-6984 bp Feature: gene Location: 7129-9039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7459-8203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745 9-8203 bp Feature: gene Location: 9665-10489 bp Feature: domain Description: VirD4 Location: 9920-10427 bp Feature: domain Description: VirD4 Location: 9920-10427 bp Feature: gene Location: 10489-11052 bp Feature: domain Description: DUF3801 Location: 10681-11032 bp Feature: domain Description: DUF3801 Location: 10681-11032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, VirD4 (COG3505)

Seq: JAAIOP010000074.1 Coprococcus comes strain MSK.11.23 NODE_75_length_1536_cov_1224.68, whole genome shotgun sequence (1536 bp)
Overview 1 RT 1: 1-1536 bp Neighborhood of RT #1 [1, 1535] RVT_N RVT-GII Feature: gene Location: 1-213 bp Feature: gene Location: 603-1535 bp Feature: RT Description: RVT_N Location: 648-891 bp Feature: RT Description: RVT_N Location: 6 48-891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936 -1536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII