myRT

myRT report for GCA_013301605.1_ASM1330160v1

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Seq: JAAIOQ010000011.1 Coprococcus comes strain MSK.10.14 NODE_11_length_99352_cov_295.173, whole genome shotgun sequence (99352 bp)
Overview 1 RT 1: 43317-49023 bp Neighborhood of RT #1 [43317, 49023] N6_N4_Mtase RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type Feature: gene Location: 43317-43811 bp Feature: domain Description: N6_N4_Mtase Location: 43395-43791 bp Feature: domain Description: N6_N4_Mtase Location: 43395-43791 bp Feature: gene Location: 43808-44071 bp Feature: gene Location: 44192-45982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44459-45272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44459-45272 bp Feature: domain Description: Intron_maturas2 Location: 45356-45653 bp Feature: domain Description: Intron_maturas2 Location: 45356-45653 bp Feature: gene Location: 46476-48704 bp Feature: domain Description: VirB4_CagE Location: 46632-47082 bp Feature: domain Description: VirB4_CagE Location: 46632-47082 bp Feature: domain Description: TraC-F-type Location: 47337-48666 bp Feature: domain Description: TraC-F-type Location: 47337-48666 bp Feature: gene Location: 48835-49023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_N4_Mtase (pfam01555), RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746)

Seq: JAAIOQ010000039.1 Coprococcus comes strain MSK.10.14 NODE_39_length_15973_cov_244.613, whole genome shotgun sequence (15973 bp)
Overview 1 RT 1: 5285-10422 bp Neighborhood of RT #1 [5285, 10422] RVT-GII GIIM Feature: gene Location: 5285-5824 bp Feature: gene Location: 6145-6351 bp Feature: gene Location: 6407-7801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6725-7349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672 5-7349 bp Feature: domain Description: GIIM Note: maturase Location: 7406-7622 bp Feature: domain Description: GIIM Note: maturase Location: 7406-762 2 bp Feature: gene Location: 8052-8801 bp Feature: gene Location: 8905-10422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIOQ010000074.1 Coprococcus comes strain MSK.10.14 NODE_75_length_1914_cov_481.164, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 74-1289 bp Neighborhood of RT #1 [74, 1468] RVT-GII GIIM Feature: gene Location: 74-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 92-1016 bp Feature: domain Description: GIIM Note: maturase Location: 1073-1289 bp Feature: domain Description: GIIM Note: maturase Location: 1073 -1289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIOQ010000008.1 Coprococcus comes strain MSK.10.14 NODE_8_length_114055_cov_189.25, whole genome shotgun sequence (114055 bp)
Overview 1 RT 1: 16785-21119 bp 2 RT 2: 51146-54347 bp Neighborhood of RT #1 [16785, 21127] RVT-DGRs YgiT_finger Neighborhood of RT #2 [51146, 54355] RVT-DGRs Phage_XkdX Feature: gene Location: 16785-17000 bp Feature: gene Location: 16991-18694 bp Feature: gene Location: 18959-20275 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19361-19970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19361-19970 bp Feature: gene Location: 20232-20561 bp Feature: gene Location: 20876-21127 bp Feature: domain Description: YgiT_finger Location: 21053-21119 bp Feature: domain Description: YgiT_finger Location: 21053-21119 bp Feature: gene Location: 51146-52420 bp Feature: gene Location: 52516-52650 bp Feature: gene Location: 52804-53967 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53017-53644 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53017-5364 4 bp Feature: gene Location: 53993-54190 bp Feature: gene Location: 54206-54355 bp Feature: domain Description: Phage_XkdX Location: 54212-54347 bp Feature: domain Description: Phage_XkdX Location: 54 212-54 34 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, YgiT_finger (TIGR03831), Phage_XkdX (pfam09693)