myRT

myRT report for GCA_013302125.1_ASM1330212v1

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Seq: JAAIPO010000104.1 Blautia wexlerae strain MSK.14.2 NODE_104_length_9711_cov_200.133, whole genome shotgun sequence (9711 bp)
Overview 1 RT 1: 8031-9699 bp Neighborhood of RT #1 [8031, 9710] RVT-GII GIIM Feature: gene Location: 8031-8267 bp Feature: gene Location: 8410-8553 bp Feature: gene Location: 8562-9710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8817-9504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 7-9504 bp Feature: domain Description: GIIM Note: maturase Location: 9585-9699 bp Feature: domain Description: GIIM Note: maturase Location: 9585-9699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIPO010000121.1 Blautia wexlerae strain MSK.14.2 NODE_121_length_5797_cov_158.526, whole genome shotgun sequence (5797 bp)
Overview 1 RT 1: 2-3456 bp Neighborhood of RT #1 [2, 3530] RVT-GII AAA_10 TcpE Feature: gene Location: 2-907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 -863 bp Feature: gene Location: 1604-3154 bp Feature: domain Description: AAA_10 Location: 2933-3116 bp Feature: domain Description: AAA_10 Location: 2 933-3116 bp Feature: gene Location: 3141-3530 bp Feature: domain Description: TcpE Location: 3159-3456 bp Feature: domain Description: TcpE Location: 3159-3456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846), TcpE (pfam12648)

Seq: JAAIPO010000002.1 Blautia wexlerae strain MSK.14.2 NODE_2_length_131831_cov_210.832, whole genome shotgun sequence (131831 bp)
Overview 1 RT 1: 9845-13614 bp 2 RT 2: 30981-43263 bp Neighborhood of RT #1 [9845, 13763] RVT-GII Intron_maturas2 HNHc PrgI Neighborhood of RT #2 [30981, 43655] YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 YodL LPD16 DUF4316 LPD25 Feature: gene Location: 9845-10516 bp Feature: gene Location: 10631-10846 bp Feature: gene Location: 11092-12924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11356-12187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 56-12187 bp Feature: domain Description: Intron_maturas2 Location: 12259-12574 bp Feature: domain Description: Intron_maturas2 Location: 12259-12574 bp Feature: domain Description: HNHc Note: nucleases Location: 12721-12895 bp Feature: domain Description: HNHc Note: nucleases Location: 12721-12895 bp Feature: gene Location: 13000-13302 bp Feature: gene Location: 13326-13763 bp Feature: domain Description: PrgI Location: 13341-13614 bp Feature: domain Description: PrgI Location: 13 3 41-13 614 bp Feature: gene Location: 30981-37340 bp Feature: domain Description: YtxK Location: 33528-34308 bp Feature: domain Description: YtxK Location: 3 3 528-3 43 08 bp Feature: domain Description: COG4646 Location: 34371-36936 bp Feature: domain Description: COG4646 Location: 3 43 71-3 693 6 bp Feature: gene Location: 37463-37657 bp Feature: gene Location: 37890-39704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38154-38976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8154-3 8976 bp Feature: domain Description: Intron_maturas2 Location: 39048-39480 bp Feature: domain Description: Intron_maturas2 Location: 3 9048-3 9480 bp Feature: domain Description: HNHc Note: nucleases Location: 39531-39675 bp Feature: domain Description: HNHc Note: nucleases Location: 3 953 1-3 9675 bp Feature: gene Location: 39764-40822 bp Feature: domain Description: KOG1000 Location: 39812-39992 bp Feature: domain Description: KOG1000 Location: 3 9812-3 9992 bp Feature: gene Location: 40899-43655 bp Feature: domain Description: YodL Location: 41679-41973 bp Feature: domain Description: YodL Location: 41679-41973 bp Feature: domain Description: LPD16 Location: 42003-42225 bp Feature: domain Description: LPD16 Location: 42003 -42225 bp Feature: domain Description: DUF4316 Location: 42273-42357 bp Feature: domain Description: DUF43 16 Location: 42273 -423 57 bp Feature: domain Description: LPD25 Location: 42966-43263 bp Feature: domain Description: LPD25 Location: 42966-43 263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195)
LPD25 (pfam18840)

Seq: JAAIPO010000062.1 Blautia wexlerae strain MSK.14.2 NODE_62_length_27681_cov_236.056, whole genome shotgun sequence (27681 bp)
Overview 1 RT 1: 24873-27051 bp Neighborhood of RT #1 [24873, 27140] DUF2442 RVT-GII GIIM Feature: gene Location: 24873-25088 bp Feature: domain Description: DUF2442 Location: 24879-25056 bp Feature: domain Description: DUF24 4 2 Location: 24 879-25056 bp Feature: gene Location: 25262-25486 bp Feature: gene Location: 25752-27140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26085-26778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26085-26778 bp Feature: domain Description: GIIM Note: maturase Location: 26841-27051 bp Feature: domain Description: GIIM Note: maturase Location: 2684 1-27051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2442 (pfam10387), RVT-GII, GIIM (pfam08388)

Seq: JAAIPO010000083.1 Blautia wexlerae strain MSK.14.2 NODE_83_length_15175_cov_336.676, whole genome shotgun sequence (15175 bp)
Overview 1 RT 1: 8502-12815 bp Neighborhood of RT #1 [8502, 12815] INT_RitB_C_like INT_RitC_C_like RVT-GII GIIM AAAA Feature: gene Location: 8502-8816 bp Feature: domain Description: INT_RitB_C_like Location: 8517-8787 bp Feature: domain Description: INT_RitB_C_like Location: 85 17-8787 bp Feature: gene Location: 9023-9739 bp Feature: domain Description: INT_RitC_C_like Location: 9206-9725 bp Feature: domain Description: INT_RitC_C_like Location: 9206-9725 bp Feature: gene Location: 10013-10780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10028-10133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10028-10133 bp Feature: domain Description: GIIM Note: maturase Location: 10187-10418 bp Feature: domain Description: GIIM Note: maturase Location: 10187-10418 bp Feature: gene Location: 10919-12334 bp Feature: domain Description: AAAA Location: 10922-12149 bp Feature: domain Description: AAAA Location: 10922-12149 bp Feature: gene Location: 12492-12815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388), AAAA (COG1672)