myRT

myRT report for GCA_013302185.1_ASM1330218v1

Download annotations/find similar RTs

Seq: JAAWUK010000108.1 Blautia producta strain MSK.4.13 NODE_108_length_1473_cov_188.535, whole genome shotgun sequence (1473 bp)
Overview 1 RT 1: 3-1465 bp Neighborhood of RT #1 [3, 1470] RVT_N RVT-GII GIIM Feature: gene Location: 3-227 bp Feature: gene Location: 268-1470 bp Feature: RT Description: RVT_N Location: 331-574 bp Feature: RT Description: RVT_N Location: 331 -574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 622-1276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 622-1 276 bp Feature: domain Description: GIIM Note: maturase Location: 1345-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1 345-1 465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAWUK010000010.1 Blautia producta strain MSK.4.13 NODE_10_length_101561_cov_86.1326, whole genome shotgun sequence (101561 bp)
Overview 1 RT 1: 97217-100651 bp Neighborhood of RT #1 [97217, 100651] PHA00653 Avd_like RVT-DGRs Feature: gene Location: 97217-98359 bp Feature: domain Description: PHA00653 Location: 97340-98357 bp Feature: domain Description: PHA00653 Location: 97340-98357 bp Feature: gene Location: 98401-98757 bp Feature: domain Description: Avd_like Location: 98431-98728 bp Feature: domain Description: Avd_like Location: 98431-9872 8 bp Feature: gene Location: 99072-100142 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99309-99930 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99309-99930 bp Feature: gene Location: 100143-100337 bp Feature: gene Location: 100478-100651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs

Seq: JAAWUK010000028.1 Blautia producta strain MSK.4.13 NODE_28_length_46082_cov_65.1926, whole genome shotgun sequence (46082 bp)
Overview 1 RT 1: 14237-28258 bp Neighborhood of RT #1 [14237, 28258] YodL LPD16 DUF4316 LPD25 RVT_N RVT-GII GIIM YtxK COG4646 HELICc Feature: gene Location: 14237-16987 bp Feature: domain Description: YodL Location: 15017-15311 bp Feature: domain Description: YodL Location: 15017-153 11 bp Feature: domain Description: LPD16 Location: 15341-15563 bp Feature: domain Description: LPD16 Location: 153 41-15563 bp Feature: domain Description: DUF4316 Location: 15611-15695 bp Feature: domain Description: DUF43 16 Location: 15611-15695 bp Feature: domain Description: LPD25 Location: 16304-16595 bp Feature: domain Description: LPD25 Location: 163 04-16595 bp Feature: gene Location: 17068-18063 bp Feature: gene Location: 18064-19734 bp Feature: RT Description: RVT_N Location: 18109-18352 bp Feature: RT Description: RVT_N Location: 18109-183 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18397-19045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 97-19045 bp Feature: domain Description: GIIM Note: maturase Location: 19099-19330 bp Feature: domain Description: GIIM Note: maturase Location: 19099-193 3 0 bp Feature: gene Location: 20313-27101 bp Feature: domain Description: YtxK Location: 23142-23976 bp Feature: domain Description: YtxK Location: 23 142-23 976 bp Feature: domain Description: COG4646 Location: 24039-26604 bp Feature: domain Description: COG4646 Location: 2403 9-26604 bp Feature: domain Description: HELICc Location: 26670-27027 bp Feature: domain Description: HELICc Location: 26670-27027 bp Feature: gene Location: 27170-28258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490)

Seq: JAAWUK010000031.1 Blautia producta strain MSK.4.13 NODE_31_length_42305_cov_67.3021, whole genome shotgun sequence (42305 bp)
Overview 1 RT 1: 23442-25558 bp Neighborhood of RT #1 [23442, 25558] Avd_like RVT-DGRs Feature: gene Location: 23442-23852 bp Feature: domain Description: Avd_like Location: 23490-23826 bp Feature: domain Description: Avd_like Location: 234 90-23826 bp Feature: gene Location: 23864-24010 bp Feature: gene Location: 24152-25183 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24353-24953 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24 353-24 953 bp Feature: gene Location: 25186-25326 bp Feature: gene Location: 25412-25558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JAAWUK010000093.1 Blautia producta strain MSK.4.13 NODE_93_length_2716_cov_138.23, whole genome shotgun sequence (2716 bp)
Overview 1 RT 1: 111-1086 bp Neighborhood of RT #1 [111, 1916] RVT-GII Feature: gene Location: 111-1916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAWUK010000097.1 Blautia producta strain MSK.4.13 NODE_97_length_2513_cov_160.385, whole genome shotgun sequence (2513 bp)
Overview 1 RT 1: 111-1605 bp Neighborhood of RT #1 [111, 1943] RVT-GII Intron_maturas2 Feature: gene Location: 111-1943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1224 bp Feature: domain Description: Intron_maturas2 Location: 1302-1605 bp Feature: domain Description: Intron_maturas2 Location: 1302-16 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)