myRT

myRT report for GCA_013302245.1_ASM1330224v1

Download annotations/find similar RTs

Seq: JAAIPT010000103.1 Blautia obeum strain MSK.13.37 NODE_103_length_866_cov_253.311, whole genome shotgun sequence (866 bp)
Overview 1 RT 1: 231-865 bp Neighborhood of RT #1 [231, 864] RVT-GII Feature: gene Location: 231-431 bp Feature: gene Location: 523-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 4-865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIPT010000106.1 Blautia obeum strain MSK.13.37 NODE_106_length_816_cov_102.971, whole genome shotgun sequence (816 bp)
Overview 1 RT 1: 2-635 bp Neighborhood of RT #1 [2, 814] RVT-GII Feature: gene Location: 2-814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIPT010000120.1 Blautia obeum strain MSK.13.37 NODE_120_length_507_cov_569.898, whole genome shotgun sequence (507 bp)
Overview 1 RT 1: 1-502 bp Neighborhood of RT #1 [1, 504] RVT-GII GIIM Feature: gene Location: 1-504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-3 22 bp Feature: domain Description: GIIM Note: maturase Location: 403-502 bp Feature: domain Description: GIIM Note: maturase Location: 403 -502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIPT010000023.1 Blautia obeum strain MSK.13.37 NODE_23_length_61728_cov_147.243, whole genome shotgun sequence (61728 bp)
Overview 1 RT 1: 39341-44728 bp Neighborhood of RT #1 [39341, 44766] PBP2_TRAP_SBP_like_5 PrpR_N AtoC RVT-GII GIIM DDE_Tnp_1_6 Feature: gene Location: 39341-40330 bp Feature: domain Description: PBP2_TRAP_SBP_like_5 Location: 39440-40316 bp Feature: domain Description: PBP2_TRAP_SBP_like_5 Location: 394 4 0-4 0316 bp Feature: gene Location: 40587-42368 bp Feature: domain Description: PrpR_N Location: 40662-41148 bp Feature: domain Description: PrpR_N Location: 4 0662-4 114 8 bp Feature: domain Description: AtoC Location: 41487-42363 bp Feature: domain Description: AtoC Location: 4 14 87-4 2363 bp Feature: gene Location: 42549-43835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42840-43473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 284 0-4 34 73 bp Feature: domain Description: GIIM Note: maturase Location: 43554-43767 bp Feature: domain Description: GIIM Note: maturase Location: 4 3554 -4 3767 bp Feature: gene Location: 43973-44131 bp Feature: gene Location: 44500-44766 bp Feature: domain Description: DDE_Tnp_1_6 Location: 44512-44728 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4 4 512-4 4 728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_SBP_like_5 (cd13675), PrpR_N (pfam06506), AtoC (COG2204), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751)

Seq: JAAIPT010000002.1 Blautia obeum strain MSK.13.37 NODE_2_length_217251_cov_155.386, whole genome shotgun sequence (217251 bp)
Overview 1 RT 1: 1-6477 bp Neighborhood of RT #1 [1, 6482] RVT-GII GIIM PRK10060 PRK09776 PRK10060 RhaT Feature: gene Location: 1-168 bp Feature: gene Location: 509-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1337 bp Feature: domain Description: GIIM Note: maturase Location: 1403-1625 bp Feature: domain Description: GIIM Note: maturase Location: 1403-1625 bp Feature: gene Location: 2184-5555 bp Feature: domain Description: PRK10060 Location: 3327-3798 bp Feature: domain Description: PRK10060 Location: 3327-3798 bp Feature: domain Description: PRK09776 Location: 4077-4299 bp Feature: domain Description: PRK09776 Location: 4077-4299 bp Feature: domain Description: PRK10060 Location: 4371-5541 bp Feature: domain Description: PRK10060 Location: 4371-5 5 41 bp Feature: gene Location: 5634-6482 bp Feature: domain Description: RhaT Location: 5646-6477 bp Feature: domain Description: RhaT Location: 5 646-6477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10060 (cyclic di-GMP phosphodiesterase), PRK09776 (putative diguanylate cyclase; Provisional), RhaT (TIGR00776)

Seq: JAAIPT010000033.1 Blautia obeum strain MSK.13.37 NODE_33_length_34885_cov_193.423, whole genome shotgun sequence (34885 bp)
Overview 1 RT 1: 1319-5827 bp Neighborhood of RT #1 [1319, 5838] COG1373 RVT-GII PepE Feature: gene Location: 1319-1495 bp Feature: gene Location: 1794-3047 bp Feature: domain Description: COG1373 Location: 1797-3027 bp Feature: domain Description: COG1373 Location: 1797-3027 bp Feature: gene Location: 3443-4738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3698-4388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 98-4388 bp Feature: gene Location: 4852-5073 bp Feature: gene Location: 5236-5838 bp Feature: domain Description: PepE Location: 5269-5827 bp Feature: domain Description: PepE Location: 526 9-5827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, PepE (COG3340)

Seq: JAAIPT010000040.1 Blautia obeum strain MSK.13.37 NODE_40_length_27764_cov_107.276, whole genome shotgun sequence (27764 bp)
Overview 1 RT 1: 4118-11701 bp Neighborhood of RT #1 [4118, 11701] RVT-UG24 RVT-UG24 Feature: gene Location: 4118-6514 bp Feature: gene Location: 6821-8071 bp Feature: gene Location: 8084-10138 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 8432-8660 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 8432-8660 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 8738-8978 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 87 38-897 8 bp Feature: gene Location: 10315-10851 bp Feature: gene Location: 10844-11701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24

Seq: JAAIPT010000046.1 Blautia obeum strain MSK.13.37 NODE_46_length_19322_cov_130.809, whole genome shotgun sequence (19322 bp)
Overview 1 RT 1: 11090-13769 bp Neighborhood of RT #1 [11090, 13769] rSAM_mob_pairA reg_rSAM_mob RVT-GII group_II_RT_mat group_II_RT_mat Feature: gene Location: 11090-11779 bp Feature: domain Description: rSAM_mob_pairA Location: 11099-11756 bp Feature: domain Description: rSAM_mob_pairA Location: 11099-11756 bp Feature: gene Location: 11776-12213 bp Feature: domain Description: reg_rSAM_mob Location: 11788-12208 bp Feature: domain Description: reg_rSAM_mob Location: 1178 8 -12208 bp Feature: gene Location: 12410-13153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12413-12734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12413-12734 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12770-13061 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12770-13061 bp Feature: gene Location: 13193-13471 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13283-13466 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1328 3-13466 bp Feature: gene Location: 13524-13769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_mob_pairA (TIGR04471), reg_rSAM_mob (TIGR04472), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JAAIPT010000007.1 Blautia obeum strain MSK.13.37 NODE_7_length_135078_cov_192.733, whole genome shotgun sequence (135078 bp)
Overview 1 RT 1: 2-1446 bp Neighborhood of RT #1 [2, 1446] RVT-GII Feature: gene Location: 2-178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-179 bp Feature: gene Location: 243-1007 bp Feature: gene Location: 1240-1446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIPT010000096.1 Blautia obeum strain MSK.13.37 NODE_96_length_1177_cov_395.106, whole genome shotgun sequence (1177 bp)
Overview 1 RT 1: 541-1177 bp Neighborhood of RT #1 [541, 1176] RVT-GII Feature: gene Location: 541-1176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII